miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 5' -56.9 NC_001347.2 + 206614 0.82 0.192147
Target:  5'- uCUGCAGCUGCGuCACGgGUcuaGCCGGCc -3'
miRNA:   3'- -GACGUCGACGCuGUGCgCA---UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 77064 0.78 0.329066
Target:  5'- gUGCAGCgugagGCGcggGCGCGCGUcgGCCGGCGa -3'
miRNA:   3'- gACGUCGa----CGC---UGUGCGCA--UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 72278 0.74 0.497363
Target:  5'- -gGCAGCUGCggcgguagGACACGCGggcGCCGGaCAg -3'
miRNA:   3'- gaCGUCGACG--------CUGUGCGCa--UGGUC-GU- -5'
1883 5' -56.9 NC_001347.2 + 87522 0.74 0.497363
Target:  5'- -aGCAGCaccagGCGACAC-CGUAUCAGCu -3'
miRNA:   3'- gaCGUCGa----CGCUGUGcGCAUGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 153664 0.74 0.535606
Target:  5'- -gGCGGCUGCGGC-CGCGgcggagGCCgaAGCGg -3'
miRNA:   3'- gaCGUCGACGCUGuGCGCa-----UGG--UCGU- -5'
1883 5' -56.9 NC_001347.2 + 118662 0.74 0.535606
Target:  5'- -cGCAGCgacauggacgGCGACGUGCGUACCgcGGCAg -3'
miRNA:   3'- gaCGUCGa---------CGCUGUGCGCAUGG--UCGU- -5'
1883 5' -56.9 NC_001347.2 + 122935 0.73 0.564949
Target:  5'- cCUGCGGCUGCGACGCGaaa--CGGUg -3'
miRNA:   3'- -GACGUCGACGCUGUGCgcaugGUCGu -5'
1883 5' -56.9 NC_001347.2 + 66655 0.72 0.614668
Target:  5'- -cGCGGCUGCccGGguCGCGcACCAGCGu -3'
miRNA:   3'- gaCGUCGACG--CUguGCGCaUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 202061 0.72 0.624677
Target:  5'- cCUGCGcuCUGCGuugcCACGCGUACUGGCu -3'
miRNA:   3'- -GACGUc-GACGCu---GUGCGCAUGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 190627 0.72 0.630685
Target:  5'- -cGCAGCUggcuuuuauaggcaGCGACgugcacgGCGCGUGCUGGCGc -3'
miRNA:   3'- gaCGUCGA--------------CGCUG-------UGCGCAUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 230110 0.72 0.634691
Target:  5'- -cGCgGGCgUGUGGCGgGUGUGCCGGCGg -3'
miRNA:   3'- gaCG-UCG-ACGCUGUgCGCAUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 631 0.72 0.634691
Target:  5'- -cGCgGGCgUGUGGCGgGUGUGCCGGCGg -3'
miRNA:   3'- gaCG-UCG-ACGCUGUgCGCAUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 164771 0.71 0.674652
Target:  5'- aCUGCcgcccgAGCUGaagcaGACGCGCGUcaaccuGCCGGCu -3'
miRNA:   3'- -GACG------UCGACg----CUGUGCGCA------UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 21232 0.71 0.694464
Target:  5'- -cGCGGUUGCGGuCGCGC--ACCGGCu -3'
miRNA:   3'- gaCGUCGACGCU-GUGCGcaUGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 153529 0.71 0.694464
Target:  5'- gUGCGGCUcGC-ACACGCGguagcguuCCAGCGu -3'
miRNA:   3'- gACGUCGA-CGcUGUGCGCau------GGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 199683 0.71 0.714077
Target:  5'- cCUGCGGC--CGGC-CGCgGUGCCGGCGg -3'
miRNA:   3'- -GACGUCGacGCUGuGCG-CAUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 14956 0.7 0.723787
Target:  5'- -gGCAGCU-CGGCACGCcccggggcGUGCgGGCAa -3'
miRNA:   3'- gaCGUCGAcGCUGUGCG--------CAUGgUCGU- -5'
1883 5' -56.9 NC_001347.2 + 150106 0.7 0.733422
Target:  5'- -aGCAGC-GUGuuGCGCGUcaaccGCCAGCGa -3'
miRNA:   3'- gaCGUCGaCGCugUGCGCA-----UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 214036 0.7 0.742973
Target:  5'- uCUGCuGCUGUG-CGCGCGUcaucuggacgaGCUGGCGc -3'
miRNA:   3'- -GACGuCGACGCuGUGCGCA-----------UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 164581 0.7 0.752431
Target:  5'- gCUGCuGC-GCGACACG-GUGgCGGCGg -3'
miRNA:   3'- -GACGuCGaCGCUGUGCgCAUgGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.