miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 5' -56.9 NC_001347.2 + 45152 0.66 0.903839
Target:  5'- -aGCAGCcgccggGCGGCACGggcaaGUGCUucAGCAg -3'
miRNA:   3'- gaCGUCGa-----CGCUGUGCg----CAUGG--UCGU- -5'
1883 5' -56.9 NC_001347.2 + 212957 0.66 0.903839
Target:  5'- -cGCGGUUGC--CGCGCGUauggccGCCGGCc -3'
miRNA:   3'- gaCGUCGACGcuGUGCGCA------UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 32650 0.66 0.903839
Target:  5'- -cGCAGCUGCuGGaGCGCG-GCCuGCu -3'
miRNA:   3'- gaCGUCGACG-CUgUGCGCaUGGuCGu -5'
1883 5' -56.9 NC_001347.2 + 166887 0.66 0.903839
Target:  5'- gUGCAGCUGCaGAUcaGCGCcucGUG-CGGCAa -3'
miRNA:   3'- gACGUCGACG-CUG--UGCG---CAUgGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 81689 0.66 0.903225
Target:  5'- -aGCGGCgGCGugAccggcggugcgguCGCGggugGCCGGCGu -3'
miRNA:   3'- gaCGUCGaCGCugU-------------GCGCa---UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 198324 0.67 0.891134
Target:  5'- gCUGCuGUUGgGAUACGUGcugGCCAGg- -3'
miRNA:   3'- -GACGuCGACgCUGUGCGCa--UGGUCgu -5'
1883 5' -56.9 NC_001347.2 + 73022 0.67 0.891134
Target:  5'- -cGCAGuUUGCGGCGCagacgucgGCGguccuCCAGCAg -3'
miRNA:   3'- gaCGUC-GACGCUGUG--------CGCau---GGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 64831 0.67 0.891134
Target:  5'- -cGCGGUuugGCG-UGCGCGUACC-GCAg -3'
miRNA:   3'- gaCGUCGa--CGCuGUGCGCAUGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 140110 0.67 0.884454
Target:  5'- -cGCGGCcGCGAaACGCu--CCAGCAc -3'
miRNA:   3'- gaCGUCGaCGCUgUGCGcauGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 145283 0.67 0.884454
Target:  5'- -cGCAGUggaaaacGCGAC-CGCcgGCCAGCAa -3'
miRNA:   3'- gaCGUCGa------CGCUGuGCGcaUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 121855 0.67 0.884454
Target:  5'- gCUGCAGgUGCaGCACaCGUACUuuacgGGCAg -3'
miRNA:   3'- -GACGUCgACGcUGUGcGCAUGG-----UCGU- -5'
1883 5' -56.9 NC_001347.2 + 104477 0.67 0.884454
Target:  5'- -aGCAGCUcGC-ACAgGCGcuggGCCAGCu -3'
miRNA:   3'- gaCGUCGA-CGcUGUgCGCa---UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 227993 0.67 0.877559
Target:  5'- aCUGCccGCUGgacgGGCACGUGUACCcGCu -3'
miRNA:   3'- -GACGu-CGACg---CUGUGCGCAUGGuCGu -5'
1883 5' -56.9 NC_001347.2 + 38097 0.67 0.877559
Target:  5'- -aGCGGCcGCGGCGCG-GgcUCGGCGu -3'
miRNA:   3'- gaCGUCGaCGCUGUGCgCauGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 78596 0.67 0.877559
Target:  5'- gUGCAGCccGCGACGaucUGUACCuGCAc -3'
miRNA:   3'- gACGUCGa-CGCUGUgc-GCAUGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 122465 0.67 0.876858
Target:  5'- cCUGCuGCccaUGCGACugGCGUccccggagacggaACC-GCAa -3'
miRNA:   3'- -GACGuCG---ACGCUGugCGCA-------------UGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 111194 0.67 0.870455
Target:  5'- -cGCAGCcGCGcUAUGCGgcCCGGCc -3'
miRNA:   3'- gaCGUCGaCGCuGUGCGCauGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 228346 0.67 0.870455
Target:  5'- -gGUGGCUG-GGCuGCGCGgcgggGCCGGCGa -3'
miRNA:   3'- gaCGUCGACgCUG-UGCGCa----UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 44387 0.68 0.863146
Target:  5'- gCUGauucuGCUGCGAUcucaggaaaGCGCGgcgguCCAGCAa -3'
miRNA:   3'- -GACgu---CGACGCUG---------UGCGCau---GGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 33277 0.68 0.863146
Target:  5'- -gGCAcucGCUGCGACACGgGgacgcGCC-GCAg -3'
miRNA:   3'- gaCGU---CGACGCUGUGCgCa----UGGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.