miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 5' -56.9 NC_001347.2 + 631 0.72 0.634691
Target:  5'- -cGCgGGCgUGUGGCGgGUGUGCCGGCGg -3'
miRNA:   3'- gaCG-UCG-ACGCUGUgCGCAUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 14956 0.7 0.723787
Target:  5'- -gGCAGCU-CGGCACGCcccggggcGUGCgGGCAa -3'
miRNA:   3'- gaCGUCGAcGCUGUGCG--------CAUGgUCGU- -5'
1883 5' -56.9 NC_001347.2 + 21232 0.71 0.694464
Target:  5'- -cGCGGUUGCGGuCGCGC--ACCGGCu -3'
miRNA:   3'- gaCGUCGACGCU-GUGCGcaUGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 32650 0.66 0.903839
Target:  5'- -cGCAGCUGCuGGaGCGCG-GCCuGCu -3'
miRNA:   3'- gaCGUCGACG-CUgUGCGCaUGGuCGu -5'
1883 5' -56.9 NC_001347.2 + 33277 0.68 0.863146
Target:  5'- -gGCAcucGCUGCGACACGgGgacgcGCC-GCAg -3'
miRNA:   3'- gaCGU---CGACGCUGUGCgCa----UGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 36271 0.66 0.908075
Target:  5'- gUGCGGCUggcgcGCGACcucaggggcuucguGCGCGUgggGCUGGCGc -3'
miRNA:   3'- gACGUCGA-----CGCUG--------------UGCGCA---UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 37658 0.68 0.847936
Target:  5'- -gGCAGCUGCaGCACGUGgagACgCuGCGu -3'
miRNA:   3'- gaCGUCGACGcUGUGCGCa--UG-GuCGU- -5'
1883 5' -56.9 NC_001347.2 + 38097 0.67 0.877559
Target:  5'- -aGCGGCcGCGGCGCG-GgcUCGGCGu -3'
miRNA:   3'- gaCGUCGaCGCUGUGCgCauGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 38246 0.68 0.847936
Target:  5'- -gGCAGCgGCGACgACG-GUGgCGGCGa -3'
miRNA:   3'- gaCGUCGaCGCUG-UGCgCAUgGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 44387 0.68 0.863146
Target:  5'- gCUGauucuGCUGCGAUcucaggaaaGCGCGgcgguCCAGCAa -3'
miRNA:   3'- -GACgu---CGACGCUG---------UGCGCau---GGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 45152 0.66 0.903839
Target:  5'- -aGCAGCcgccggGCGGCACGggcaaGUGCUucAGCAg -3'
miRNA:   3'- gaCGUCGa-----CGCUGUGCg----CAUGG--UCGU- -5'
1883 5' -56.9 NC_001347.2 + 45402 0.66 0.921212
Target:  5'- -cGCAGCUG-GGC-CGUGaaaACCAGCu -3'
miRNA:   3'- gaCGUCGACgCUGuGCGCa--UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 62041 0.68 0.855638
Target:  5'- --cCAGCUGCGugAUcacccgGCGgACCAGCGg -3'
miRNA:   3'- gacGUCGACGCugUG------CGCaUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 64831 0.67 0.891134
Target:  5'- -cGCGGUuugGCG-UGCGCGUACC-GCAg -3'
miRNA:   3'- gaCGUCGa--CGCuGUGCGCAUGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 66655 0.72 0.614668
Target:  5'- -cGCGGCUGCccGGguCGCGcACCAGCGu -3'
miRNA:   3'- gaCGUCGACG--CUguGCGCaUGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 69563 0.66 0.909856
Target:  5'- cCUGCuGCgUGuCGAUGCGCugGUGCCAGgCGg -3'
miRNA:   3'- -GACGuCG-AC-GCUGUGCG--CAUGGUC-GU- -5'
1883 5' -56.9 NC_001347.2 + 71934 0.69 0.814471
Target:  5'- uCUGCGGCagucagcggguggUGCGGCAgCGCGUcuACgAGCu -3'
miRNA:   3'- -GACGUCG-------------ACGCUGU-GCGCA--UGgUCGu -5'
1883 5' -56.9 NC_001347.2 + 72278 0.74 0.497363
Target:  5'- -gGCAGCUGCggcgguagGACACGCGggcGCCGGaCAg -3'
miRNA:   3'- gaCGUCGACG--------CUGUGCGCa--UGGUC-GU- -5'
1883 5' -56.9 NC_001347.2 + 72370 0.68 0.855638
Target:  5'- gUGCAGacguuuUGCGACACGUGU-CC-GCGa -3'
miRNA:   3'- gACGUCg-----ACGCUGUGCGCAuGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 73022 0.67 0.891134
Target:  5'- -cGCAGuUUGCGGCGCagacgucgGCGguccuCCAGCAg -3'
miRNA:   3'- gaCGUC-GACGCUGUG--------CGCau---GGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.