miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18830 5' -56 NC_004683.1 + 17791 0.66 0.693617
Target:  5'- cCUCGAagaggucaacgugacGCCGCUGGCG-CACGGcGACGa -3'
miRNA:   3'- uGAGCU---------------UGGCGGUCGCgGUGUC-UUGU- -5'
18830 5' -56 NC_004683.1 + 28483 0.66 0.689275
Target:  5'- aGCg-GAACCGCCcGCGCCcCGGcuGCGu -3'
miRNA:   3'- -UGagCUUGGCGGuCGCGGuGUCu-UGU- -5'
18830 5' -56 NC_004683.1 + 46205 0.66 0.689275
Target:  5'- cCUgGAacgGCUGCCAGUGCCACGc---- -3'
miRNA:   3'- uGAgCU---UGGCGGUCGCGGUGUcuugu -5'
18830 5' -56 NC_004683.1 + 3213 0.66 0.689275
Target:  5'- gUUCGAGCCGaCCacaucggcaucGGCGCC-CGGGuACAg -3'
miRNA:   3'- uGAGCUUGGC-GG-----------UCGCGGuGUCU-UGU- -5'
18830 5' -56 NC_004683.1 + 26788 0.66 0.689275
Target:  5'- uGCgCGAuGCCGCCGGCGCacucgacgugaCACcGGGGCGu -3'
miRNA:   3'- -UGaGCU-UGGCGGUCGCG-----------GUG-UCUUGU- -5'
18830 5' -56 NC_004683.1 + 3937 0.66 0.689275
Target:  5'- -gUCGAACUGCaccuugggCGGCGaCuCGCGGAACGa -3'
miRNA:   3'- ugAGCUUGGCG--------GUCGC-G-GUGUCUUGU- -5'
18830 5' -56 NC_004683.1 + 43981 0.66 0.678384
Target:  5'- cACUCGAcCaCGCC-GCGCCGggugucgcggUAGGGCAc -3'
miRNA:   3'- -UGAGCUuG-GCGGuCGCGGU----------GUCUUGU- -5'
18830 5' -56 NC_004683.1 + 23473 0.66 0.678384
Target:  5'- cCUCGucgguGCCGCCgcgGGCGUUGUAGAGCGa -3'
miRNA:   3'- uGAGCu----UGGCGG---UCGCGGUGUCUUGU- -5'
18830 5' -56 NC_004683.1 + 3903 0.66 0.678384
Target:  5'- gGCUCGAucccgAUCGCCAGC-CUGCGcAGCAu -3'
miRNA:   3'- -UGAGCU-----UGGCGGUCGcGGUGUcUUGU- -5'
18830 5' -56 NC_004683.1 + 53590 0.66 0.667449
Target:  5'- gGC-CGcACCGCCGGCcgcgucuucGCCGCcGAGCu -3'
miRNA:   3'- -UGaGCuUGGCGGUCG---------CGGUGuCUUGu -5'
18830 5' -56 NC_004683.1 + 32156 0.66 0.667449
Target:  5'- aACUCGGcCCGUUguuuaGGCGCU-CAGGGCAg -3'
miRNA:   3'- -UGAGCUuGGCGG-----UCGCGGuGUCUUGU- -5'
18830 5' -56 NC_004683.1 + 8654 0.66 0.65648
Target:  5'- -gUCGAcguACCGaguGCGUCGCGGAACGc -3'
miRNA:   3'- ugAGCU---UGGCgguCGCGGUGUCUUGU- -5'
18830 5' -56 NC_004683.1 + 40407 0.66 0.65648
Target:  5'- aGCUCGAcCUGCCGcGCuCCACcGAGCc -3'
miRNA:   3'- -UGAGCUuGGCGGU-CGcGGUGuCUUGu -5'
18830 5' -56 NC_004683.1 + 47109 0.66 0.64549
Target:  5'- uGCUgGAGCCGCgAgagaucgcccGCGCCAUGGAc-- -3'
miRNA:   3'- -UGAgCUUGGCGgU----------CGCGGUGUCUugu -5'
18830 5' -56 NC_004683.1 + 28891 0.66 0.64549
Target:  5'- aGCUCc--UCGaCCAGCGuCCGCAGGGCc -3'
miRNA:   3'- -UGAGcuuGGC-GGUCGC-GGUGUCUUGu -5'
18830 5' -56 NC_004683.1 + 22907 0.66 0.64549
Target:  5'- ---aGAACUGCCGGUGUCGCuGGugAu -3'
miRNA:   3'- ugagCUUGGCGGUCGCGGUGuCUugU- -5'
18830 5' -56 NC_004683.1 + 22027 0.66 0.64439
Target:  5'- aACUCGGcggccgcACCGCCAcCGCCggGCGGAu-- -3'
miRNA:   3'- -UGAGCU-------UGGCGGUcGCGG--UGUCUugu -5'
18830 5' -56 NC_004683.1 + 5833 0.66 0.64329
Target:  5'- aGCUCGccgcgcggcaccGCCGCCaaGGCGCCugGcuggcGAACAa -3'
miRNA:   3'- -UGAGCu-----------UGGCGG--UCGCGGugU-----CUUGU- -5'
18830 5' -56 NC_004683.1 + 42650 0.66 0.634487
Target:  5'- -aUCGGcgGCCGCCGaugaguGUGCCcacACAGGACGg -3'
miRNA:   3'- ugAGCU--UGGCGGU------CGCGG---UGUCUUGU- -5'
18830 5' -56 NC_004683.1 + 26139 0.66 0.634487
Target:  5'- -aUCGGguAUCGCCGGCGCgGCGGucuCGc -3'
miRNA:   3'- ugAGCU--UGGCGGUCGCGgUGUCuu-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.