miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18834 5' -60.4 NC_004683.1 + 47675 0.66 0.453527
Target:  5'- cGGUgugugccuGGCGUAUCGgguugcccgauuGCGGgGUGUGCUGu -3'
miRNA:   3'- aCCA--------CCGCGUAGU------------CGUCgCGCACGGC- -5'
18834 5' -60.4 NC_004683.1 + 30416 0.66 0.44491
Target:  5'- aUGGUGGCGCAaggcCAGaagccgccagaaguaAGCGUGgGUCGg -3'
miRNA:   3'- -ACCACCGCGUa---GUCg--------------UCGCGCaCGGC- -5'
18834 5' -60.4 NC_004683.1 + 26755 0.66 0.443958
Target:  5'- cGG-GGCGUAUCucGCAGCuCGUcaggaacuaGCCGa -3'
miRNA:   3'- aCCaCCGCGUAGu-CGUCGcGCA---------CGGC- -5'
18834 5' -60.4 NC_004683.1 + 30775 0.66 0.443958
Target:  5'- ---cGGCGCAccgUCGGCuGCGCacGCCGc -3'
miRNA:   3'- accaCCGCGU---AGUCGuCGCGcaCGGC- -5'
18834 5' -60.4 NC_004683.1 + 25474 0.66 0.443958
Target:  5'- gUGGUGGC-CA-CcGCGGCGCuG-GCCGu -3'
miRNA:   3'- -ACCACCGcGUaGuCGUCGCG-CaCGGC- -5'
18834 5' -60.4 NC_004683.1 + 45767 0.66 0.443958
Target:  5'- gGGUaGUGCAgcacCAGCcacAGCGCcgauGUGCCGg -3'
miRNA:   3'- aCCAcCGCGUa---GUCG---UCGCG----CACGGC- -5'
18834 5' -60.4 NC_004683.1 + 8475 0.66 0.443958
Target:  5'- cUGGUGG-GCuggaucgCGGCccGCGCGggGCCGa -3'
miRNA:   3'- -ACCACCgCGua-----GUCGu-CGCGCa-CGGC- -5'
18834 5' -60.4 NC_004683.1 + 51113 0.66 0.434504
Target:  5'- cUGGcGGgGCG-CGGcCGGCGCGaaggGCCGc -3'
miRNA:   3'- -ACCaCCgCGUaGUC-GUCGCGCa---CGGC- -5'
18834 5' -60.4 NC_004683.1 + 33528 0.66 0.434504
Target:  5'- cUGGaGGCGCGU-AGCGGCGguCG-GCCa -3'
miRNA:   3'- -ACCaCCGCGUAgUCGUCGC--GCaCGGc -5'
18834 5' -60.4 NC_004683.1 + 24788 0.66 0.425167
Target:  5'- ---gGGCGUugcggucgCGGCGGCGCGcgGCCa -3'
miRNA:   3'- accaCCGCGua------GUCGUCGCGCa-CGGc -5'
18834 5' -60.4 NC_004683.1 + 53230 0.66 0.425167
Target:  5'- gGGUGaGCgGUGUCGGgGGCGCGaacGUCGa -3'
miRNA:   3'- aCCAC-CG-CGUAGUCgUCGCGCa--CGGC- -5'
18834 5' -60.4 NC_004683.1 + 31481 0.66 0.425167
Target:  5'- cUGGUGGCG-GUCGccGCAGUGCuG-GCCu -3'
miRNA:   3'- -ACCACCGCgUAGU--CGUCGCG-CaCGGc -5'
18834 5' -60.4 NC_004683.1 + 7386 0.66 0.425167
Target:  5'- cGGaGGCGCucgaccuggauUCGGCggccgGGCGCGcUGCCa -3'
miRNA:   3'- aCCaCCGCGu----------AGUCG-----UCGCGC-ACGGc -5'
18834 5' -60.4 NC_004683.1 + 53676 0.66 0.423314
Target:  5'- cGGcGGCGaagacgcggcCGGCGGUGCG-GCCGg -3'
miRNA:   3'- aCCaCCGCgua-------GUCGUCGCGCaCGGC- -5'
18834 5' -60.4 NC_004683.1 + 56524 0.66 0.415951
Target:  5'- aGGUaGGCGCAccgCAccgauggaccuGCAGCGCuGUGCa- -3'
miRNA:   3'- aCCA-CCGCGUa--GU-----------CGUCGCG-CACGgc -5'
18834 5' -60.4 NC_004683.1 + 20307 0.66 0.406858
Target:  5'- gGGcGGCGaCggCGGCAGCGCGUucaugucccGCgCGa -3'
miRNA:   3'- aCCaCCGC-GuaGUCGUCGCGCA---------CG-GC- -5'
18834 5' -60.4 NC_004683.1 + 42113 0.67 0.397891
Target:  5'- cUGGaUGGCGCAUCGugaaccgccuGCc-CGUGUGCCc -3'
miRNA:   3'- -ACC-ACCGCGUAGU----------CGucGCGCACGGc -5'
18834 5' -60.4 NC_004683.1 + 24996 0.67 0.389051
Target:  5'- uUGGUGaucaGCcgCAGCAGCcacaGCG-GCCGg -3'
miRNA:   3'- -ACCACcg--CGuaGUCGUCG----CGCaCGGC- -5'
18834 5' -60.4 NC_004683.1 + 46713 0.67 0.380341
Target:  5'- aUGGU-GCGgGUCGGCugaucgacgGGCGCGgcgGCCu -3'
miRNA:   3'- -ACCAcCGCgUAGUCG---------UCGCGCa--CGGc -5'
18834 5' -60.4 NC_004683.1 + 31903 0.67 0.371763
Target:  5'- cGGgccGGUGCAgcCAGCGGgGCGaGCUGg -3'
miRNA:   3'- aCCa--CCGCGUa-GUCGUCgCGCaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.