miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18835 5' -61.4 NC_004683.1 + 53660 0.66 0.460092
Target:  5'- gCCggcggUGCGGCCGgCGucuGCCGCGGc -3'
miRNA:   3'- gGGaaca-GCGCCGGUgGC---UGGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 47195 0.66 0.460092
Target:  5'- gCCggcaaCGCGGucaccCCACCGGCCGCGcGa -3'
miRNA:   3'- gGGaaca-GCGCC-----GGUGGCUGGCGC-Ca -5'
18835 5' -61.4 NC_004683.1 + 350 0.66 0.459149
Target:  5'- cUCCUUgaccaccGUCGCGaccaGCC-CCG-CCGCGGg -3'
miRNA:   3'- -GGGAA-------CAGCGC----CGGuGGCuGGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 9691 0.66 0.450712
Target:  5'- aCCaa--CGCGGUgGCCGACCGUGa- -3'
miRNA:   3'- gGGaacaGCGCCGgUGGCUGGCGCca -5'
18835 5' -61.4 NC_004683.1 + 45385 0.66 0.450712
Target:  5'- gCCgugGUCaCGGCCACCccuGACCGCc-- -3'
miRNA:   3'- gGGaa-CAGcGCCGGUGG---CUGGCGcca -5'
18835 5' -61.4 NC_004683.1 + 6919 0.66 0.447919
Target:  5'- aCCCacgGUUucacugagaccgagGCGGCCgACUGGCgGCGGg -3'
miRNA:   3'- -GGGaa-CAG--------------CGCCGG-UGGCUGgCGCCa -5'
18835 5' -61.4 NC_004683.1 + 42740 0.66 0.441439
Target:  5'- gUCCUgUGugggcacacucaUCgGCGGCCGCCGAucucgUCGCGGg -3'
miRNA:   3'- -GGGA-AC------------AG-CGCCGGUGGCU-----GGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 2115 0.66 0.441439
Target:  5'- ----aGUCGUGGCCAUCGcCCugGUGGUg -3'
miRNA:   3'- gggaaCAGCGCCGGUGGCuGG--CGCCA- -5'
18835 5' -61.4 NC_004683.1 + 3591 0.66 0.432275
Target:  5'- aCCCgaGUucacCGCGGCCACC-ACCGauucCGGc -3'
miRNA:   3'- -GGGaaCA----GCGCCGGUGGcUGGC----GCCa -5'
18835 5' -61.4 NC_004683.1 + 51204 0.66 0.432275
Target:  5'- gCCU---UGCGGCCcuucgcGCCGGCCGCGc- -3'
miRNA:   3'- gGGAacaGCGCCGG------UGGCUGGCGCca -5'
18835 5' -61.4 NC_004683.1 + 5454 0.66 0.432275
Target:  5'- gCCCgccagGUCGUcGCCACCGGCgaugUGUGGc -3'
miRNA:   3'- -GGGaa---CAGCGcCGGUGGCUG----GCGCCa -5'
18835 5' -61.4 NC_004683.1 + 21757 0.66 0.432275
Target:  5'- aCCggugGUucaacgacCGCGGCCACCGAUgGuUGGUc -3'
miRNA:   3'- gGGaa--CA--------GCGCCGGUGGCUGgC-GCCA- -5'
18835 5' -61.4 NC_004683.1 + 25657 0.66 0.423223
Target:  5'- -aCUg--CGaCGGCCgccgugccguuGCCGACCGCGGc -3'
miRNA:   3'- ggGAacaGC-GCCGG-----------UGGCUGGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 25353 0.66 0.423223
Target:  5'- gCCCggcagCGCGGCCagcagugcgACCaGCUGCGGg -3'
miRNA:   3'- -GGGaaca-GCGCCGG---------UGGcUGGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 8770 0.66 0.414285
Target:  5'- cCCCUcGUCGCGGCCgagcAUCGAcaCCGaCGa- -3'
miRNA:   3'- -GGGAaCAGCGCCGG----UGGCU--GGC-GCca -5'
18835 5' -61.4 NC_004683.1 + 15133 0.66 0.414285
Target:  5'- gCCUUG-C-CGGCCugcauGCCGaacccgauGCCGCGGUa -3'
miRNA:   3'- gGGAACaGcGCCGG-----UGGC--------UGGCGCCA- -5'
18835 5' -61.4 NC_004683.1 + 14726 0.67 0.405465
Target:  5'- gUCCUUGUagggccCGGCCACCaccUCGCGGg -3'
miRNA:   3'- -GGGAACAgc----GCCGGUGGcu-GGCGCCa -5'
18835 5' -61.4 NC_004683.1 + 2173 0.67 0.396763
Target:  5'- uCCCUgauUGcCGCGGgugcaCUACUGGCCGCGa- -3'
miRNA:   3'- -GGGA---ACaGCGCC-----GGUGGCUGGCGCca -5'
18835 5' -61.4 NC_004683.1 + 23711 0.67 0.396763
Target:  5'- uUCCgc--CGCGGCggCACCGGCgGCGGc -3'
miRNA:   3'- -GGGaacaGCGCCG--GUGGCUGgCGCCa -5'
18835 5' -61.4 NC_004683.1 + 1061 0.67 0.396763
Target:  5'- aCCUUGUUGCcggucaagccacGGCCACC-ACUGuUGGUg -3'
miRNA:   3'- gGGAACAGCG------------CCGGUGGcUGGC-GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.