miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18837 5' -55 NC_004683.1 + 26289 0.65 0.73783
Target:  5'- cGGCGGCGUucucgaccuGgCGGGCgagcgcgUUGGUGUGGc- -3'
miRNA:   3'- -UCGCCGCG---------UgGCCCG-------AACUACAUUac -5'
18837 5' -55 NC_004683.1 + 13973 0.66 0.728242
Target:  5'- cAGgGGCGUuCUGGGCUUcGAggugccgcGUGAUGu -3'
miRNA:   3'- -UCgCCGCGuGGCCCGAA-CUa-------CAUUAC- -5'
18837 5' -55 NC_004683.1 + 4950 0.66 0.706663
Target:  5'- cGGCGGCGCGCUccaGGCggcucAUGUGGUu -3'
miRNA:   3'- -UCGCCGCGUGGc--CCGaac--UACAUUAc -5'
18837 5' -55 NC_004683.1 + 51620 0.66 0.706663
Target:  5'- uGGCGGCGCgccuGCCGuGCgUGAUGg---- -3'
miRNA:   3'- -UCGCCGCG----UGGCcCGaACUACauuac -5'
18837 5' -55 NC_004683.1 + 21894 0.66 0.695756
Target:  5'- cGGUGGCGCugAgCGGGCUgcUGGUGc---- -3'
miRNA:   3'- -UCGCCGCG--UgGCCCGA--ACUACauuac -5'
18837 5' -55 NC_004683.1 + 9276 0.67 0.673765
Target:  5'- cGgGGCGCAugcCCGGGCUgGAcGUGc-- -3'
miRNA:   3'- uCgCCGCGU---GGCCCGAaCUaCAUuac -5'
18837 5' -55 NC_004683.1 + 20403 0.67 0.629389
Target:  5'- uGGCGGCGCACCcgGGGCg---------- -3'
miRNA:   3'- -UCGCCGCGUGG--CCCGaacuacauuac -5'
18837 5' -55 NC_004683.1 + 6675 0.68 0.574038
Target:  5'- cGCGGCGCGCCGc---UGGUGUGGcUGg -3'
miRNA:   3'- uCGCCGCGUGGCccgaACUACAUU-AC- -5'
18837 5' -55 NC_004683.1 + 33282 0.69 0.519884
Target:  5'- cGGaCGGUGCGCUGGGUggGAUGc---- -3'
miRNA:   3'- -UC-GCCGCGUGGCCCGaaCUACauuac -5'
18837 5' -55 NC_004683.1 + 24556 0.7 0.498773
Target:  5'- uGgGGCGCcggauCCGGGCgcGGUGUAGa- -3'
miRNA:   3'- uCgCCGCGu----GGCCCGaaCUACAUUac -5'
18837 5' -55 NC_004683.1 + 6745 0.7 0.447795
Target:  5'- cAGCGGCGCGCCGcGGCcagcacGgcGUcGAUGg -3'
miRNA:   3'- -UCGCCGCGUGGC-CCGaa----CuaCA-UUAC- -5'
18837 5' -55 NC_004683.1 + 42645 0.7 0.447795
Target:  5'- cGCGGCGCGCuCGGccucGCUcaUGGUGUGc-- -3'
miRNA:   3'- uCGCCGCGUG-GCC----CGA--ACUACAUuac -5'
18837 5' -55 NC_004683.1 + 41012 0.71 0.436969
Target:  5'- cGGCGGCGCGgucagcucggcgcCCGGGUcggauccgggGAUGUAGUa -3'
miRNA:   3'- -UCGCCGCGU-------------GGCCCGaa--------CUACAUUAc -5'
18837 5' -55 NC_004683.1 + 49559 1.09 0.000951
Target:  5'- cAGCGGCGCACCGGGCUUGAUGUAAUGg -3'
miRNA:   3'- -UCGCCGCGUGGCCCGAACUACAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.