miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18838 3' -52.7 NC_004683.1 + 10787 0.66 0.876657
Target:  5'- --cUCGUCcGCGcuucUGCGGCUCGgaucagcgggaGGGCCa -3'
miRNA:   3'- aacAGCAGcUGU----AUGCUGAGC-----------UCCGG- -5'
18838 3' -52.7 NC_004683.1 + 6462 0.66 0.876657
Target:  5'- cUGUCGUCGaACAgguCG-C-CGGGGCg -3'
miRNA:   3'- aACAGCAGC-UGUau-GCuGaGCUCCGg -5'
18838 3' -52.7 NC_004683.1 + 44436 0.66 0.868717
Target:  5'- aUGUaGUCGGCcguCGGCUUGAcGGUCg -3'
miRNA:   3'- aACAgCAGCUGuauGCUGAGCU-CCGG- -5'
18838 3' -52.7 NC_004683.1 + 49113 0.66 0.868717
Target:  5'- -cGUCGUCGACuugguCGACgugcaucagUCGGcGCCg -3'
miRNA:   3'- aaCAGCAGCUGuau--GCUG---------AGCUcCGG- -5'
18838 3' -52.7 NC_004683.1 + 54083 0.66 0.868717
Target:  5'- gUGgagCGUC-ACcgGCGAgUCGAGGUg -3'
miRNA:   3'- aACa--GCAGcUGuaUGCUgAGCUCCGg -5'
18838 3' -52.7 NC_004683.1 + 12604 0.66 0.860526
Target:  5'- --cUCGcCGACAaccucgUGCGAUUCGucGCCa -3'
miRNA:   3'- aacAGCaGCUGU------AUGCUGAGCucCGG- -5'
18838 3' -52.7 NC_004683.1 + 37499 0.66 0.860526
Target:  5'- --aUCGaccCGACGUugGACaUCcGGGCCg -3'
miRNA:   3'- aacAGCa--GCUGUAugCUG-AGcUCCGG- -5'
18838 3' -52.7 NC_004683.1 + 24348 0.66 0.860526
Target:  5'- aUGagCG-CGGCGUAgGACUCGgcguaggcgcGGGCCc -3'
miRNA:   3'- aACa-GCaGCUGUAUgCUGAGC----------UCCGG- -5'
18838 3' -52.7 NC_004683.1 + 39830 0.66 0.85209
Target:  5'- -aGUCG-CGcCAUACGAUUCGAGa-- -3'
miRNA:   3'- aaCAGCaGCuGUAUGCUGAGCUCcgg -5'
18838 3' -52.7 NC_004683.1 + 6973 0.66 0.842539
Target:  5'- --cUCGUCGGCcgGCGGCccagacgUCGAGaCCg -3'
miRNA:   3'- aacAGCAGCUGuaUGCUG-------AGCUCcGG- -5'
18838 3' -52.7 NC_004683.1 + 48819 0.66 0.835421
Target:  5'- aUGguucgCGUCGGCAagaaacgcgcuggccGCGaACUCGAcGGCCg -3'
miRNA:   3'- aACa----GCAGCUGUa--------------UGC-UGAGCU-CCGG- -5'
18838 3' -52.7 NC_004683.1 + 27586 0.66 0.834521
Target:  5'- -gGUCGacCGGCGUgaagAUGAUguugUCGGGGCCg -3'
miRNA:   3'- aaCAGCa-GCUGUA----UGCUG----AGCUCCGG- -5'
18838 3' -52.7 NC_004683.1 + 52219 0.67 0.825405
Target:  5'- -cGUCGUCGGuCGgguccgccucgGCGACcCG-GGCCg -3'
miRNA:   3'- aaCAGCAGCU-GUa----------UGCUGaGCuCCGG- -5'
18838 3' -52.7 NC_004683.1 + 52071 0.67 0.796851
Target:  5'- aUGgUGUCGAUAcGCGAucgagcaccuuCUCGAGGCg -3'
miRNA:   3'- aACaGCAGCUGUaUGCU-----------GAGCUCCGg -5'
18838 3' -52.7 NC_004683.1 + 8852 0.67 0.796851
Target:  5'- gUGUCGaugcUCGGCc-GCGACgaGGGGCCg -3'
miRNA:   3'- aACAGC----AGCUGuaUGCUGagCUCCGG- -5'
18838 3' -52.7 NC_004683.1 + 44719 0.67 0.796851
Target:  5'- ---cCGcCGACGUACcACUacgcCGAGGCCg -3'
miRNA:   3'- aacaGCaGCUGUAUGcUGA----GCUCCGG- -5'
18838 3' -52.7 NC_004683.1 + 45927 0.67 0.79587
Target:  5'- -cGUCGgggUGAUucguguuGUGCGuCUCGAcGGCCa -3'
miRNA:   3'- aaCAGCa--GCUG-------UAUGCuGAGCU-CCGG- -5'
18838 3' -52.7 NC_004683.1 + 39265 0.67 0.786966
Target:  5'- -cGUUGUCGGCGUugGAgugugcCUCGGccuuGGCg -3'
miRNA:   3'- aaCAGCAGCUGUAugCU------GAGCU----CCGg -5'
18838 3' -52.7 NC_004683.1 + 43346 0.67 0.786966
Target:  5'- -cGUCGUgacucCGAUccaGUACGACgaCGAGGCg -3'
miRNA:   3'- aaCAGCA-----GCUG---UAUGCUGa-GCUCCGg -5'
18838 3' -52.7 NC_004683.1 + 56835 0.68 0.776917
Target:  5'- -cGUCGUCGuCGUggccgagaucccAUGGCUCGucGGGCUu -3'
miRNA:   3'- aaCAGCAGCuGUA------------UGCUGAGC--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.