miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18839 5' -57.1 NC_004683.1 + 45562 0.66 0.666796
Target:  5'- gGUCG-GuGcGGGGCGCGUCGCgCG-CGa -3'
miRNA:   3'- aCAGCgCuC-CCUUGUGCAGCG-GCuGC- -5'
18839 5' -57.1 NC_004683.1 + 20380 0.66 0.666796
Target:  5'- ---gGCGAGGGAucuGCACuGgcaGCUGGCGg -3'
miRNA:   3'- acagCGCUCCCU---UGUG-Cag-CGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 54619 0.66 0.666796
Target:  5'- cGUCGCGGGcGcauAGCGC-UCGCCGuCGa -3'
miRNA:   3'- aCAGCGCUC-Cc--UUGUGcAGCGGCuGC- -5'
18839 5' -57.1 NC_004683.1 + 43960 0.66 0.666796
Target:  5'- gUGUCGCGguAGGGcacgagguAGCAC-UCGCCGuuGa -3'
miRNA:   3'- -ACAGCGC--UCCC--------UUGUGcAGCGGCugC- -5'
18839 5' -57.1 NC_004683.1 + 8283 0.66 0.656131
Target:  5'- aGUUGCGAaacaGGAACAgcauUCGCCGAUGc -3'
miRNA:   3'- aCAGCGCUc---CCUUGUgc--AGCGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 49937 0.66 0.656131
Target:  5'- gGUCGa---GGAACGCGUCGCacgccgcgucaaCGACGa -3'
miRNA:   3'- aCAGCgcucCCUUGUGCAGCG------------GCUGC- -5'
18839 5' -57.1 NC_004683.1 + 21081 0.66 0.656131
Target:  5'- cUGUCGCugcGGGACG-GUCGgCGACGg -3'
miRNA:   3'- -ACAGCGcucCCUUGUgCAGCgGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 27084 0.66 0.656131
Target:  5'- --cCGCGAGGGuGAUAUGUggcuUGCCGAgGu -3'
miRNA:   3'- acaGCGCUCCC-UUGUGCA----GCGGCUgC- -5'
18839 5' -57.1 NC_004683.1 + 43860 0.66 0.656131
Target:  5'- aGUCGuCGAGGGAcugcuuagcgauGCcagcagcuuucGCGUUGCgCGACu -3'
miRNA:   3'- aCAGC-GCUCCCU------------UG-----------UGCAGCG-GCUGc -5'
18839 5' -57.1 NC_004683.1 + 4464 0.66 0.634747
Target:  5'- -aUCgGCGuGGGAcuCGuCGUCGCUGGCGu -3'
miRNA:   3'- acAG-CGCuCCCUu-GU-GCAGCGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 3480 0.66 0.634747
Target:  5'- --aCGC-AGGaacGGCACGUCGUCGGCGu -3'
miRNA:   3'- acaGCGcUCCc--UUGUGCAGCGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 50731 0.66 0.634747
Target:  5'- gUGUCGUGGuGGGAGgACGUucagCGCauCGACa -3'
miRNA:   3'- -ACAGCGCU-CCCUUgUGCA----GCG--GCUGc -5'
18839 5' -57.1 NC_004683.1 + 24872 0.67 0.624047
Target:  5'- cGUCGCcgaaGAGGugcucGAGCGCGUCcucgaacccGUCGGCGg -3'
miRNA:   3'- aCAGCG----CUCC-----CUUGUGCAG---------CGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 43490 0.67 0.620838
Target:  5'- -cUCGUGGGGGcugccgcgaccgcaGAC-CGUCGgCGACGu -3'
miRNA:   3'- acAGCGCUCCC--------------UUGuGCAGCgGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 54001 0.67 0.619769
Target:  5'- cGUCGCgcugcugGAGGGcAACGgcuggaccaucaucCG-CGCCGACGa -3'
miRNA:   3'- aCAGCG-------CUCCC-UUGU--------------GCaGCGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 53414 0.67 0.613354
Target:  5'- uUGUC-CGuGGGGACAUccaaGaCGCCGAUGa -3'
miRNA:   3'- -ACAGcGCuCCCUUGUG----CaGCGGCUGC- -5'
18839 5' -57.1 NC_004683.1 + 52114 0.67 0.600543
Target:  5'- gGUCuGCGAGGGAcGCGCGcagcuguuccugUGCCuGACGc -3'
miRNA:   3'- aCAG-CGCUCCCU-UGUGCa-----------GCGG-CUGC- -5'
18839 5' -57.1 NC_004683.1 + 36302 0.67 0.592022
Target:  5'- cUGUCGCGgguAGGGggUugGgCGCCa--- -3'
miRNA:   3'- -ACAGCGC---UCCCuuGugCaGCGGcugc -5'
18839 5' -57.1 NC_004683.1 + 47284 0.67 0.5814
Target:  5'- -cUCGCGcggccgguGGGGugacCGCGUUGCCGGCc -3'
miRNA:   3'- acAGCGC--------UCCCuu--GUGCAGCGGCUGc -5'
18839 5' -57.1 NC_004683.1 + 56228 0.67 0.5814
Target:  5'- cGUgaGCGuGGGAGCGgaaGUCGuuGAUGg -3'
miRNA:   3'- aCAg-CGCuCCCUUGUg--CAGCggCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.