Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 8612 | 0.66 | 0.887865 |
|
Target: 5'- cCGGUGcGGUGGCCGcccugcagucgguUGUcGACgGUCGUGu -3' miRNA: 3'- -GCUACuUCACUGGC-------------ACA-CUG-CAGCGC- -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 13955 | 0.67 | 0.857171 |
|
Target: 5'- ---cGAGGUG-CCGcGUGAUGUCaGCGc -3' miRNA: 3'- gcuaCUUCACuGGCaCACUGCAG-CGC- -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 55014 | 0.67 | 0.837351 |
|
Target: 5'- cCGGUGAgagcgaaguGGcGACCGUcgucguagaccuugGUGACGUCGUu -3' miRNA: 3'- -GCUACU---------UCaCUGGCA--------------CACUGCAGCGc -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 47275 | 0.7 | 0.698722 |
|
Target: 5'- cCGGUGggGUGACCGcGUugccggccuGGCGcaccugcUCGCGu -3' miRNA: 3'- -GCUACuuCACUGGCaCA---------CUGC-------AGCGC- -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 18169 | 0.71 | 0.655983 |
|
Target: 5'- cCGAucUGAuaGGUGGCCGUGgugcccgccggGGCGUCGUu -3' miRNA: 3'- -GCU--ACU--UCACUGGCACa----------CUGCAGCGc -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 53126 | 0.71 | 0.633894 |
|
Target: 5'- uCGuugGAGGUGACCaUGUcGACGUuCGCGc -3' miRNA: 3'- -GCua-CUUCACUGGcACA-CUGCA-GCGC- -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 47833 | 0.77 | 0.335002 |
|
Target: 5'- aCGcgGAAcgGugCGUGUGACGUCGCu -3' miRNA: 3'- -GCuaCUUcaCugGCACACUGCAGCGc -5' |
|||||||
| 18841 | 3' | -52.2 | NC_004683.1 | + | 54639 | 1.11 | 0.002059 |
|
Target: 5'- cCGAUGAAGUGACCGUGUGACGUCGCGg -3' miRNA: 3'- -GCUACUUCACUGGCACACUGCAGCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home