miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18842 3' -58 NC_004683.1 + 50433 0.66 0.620902
Target:  5'- gCCUGUGUGGUUgcgGGCGcGGGcUUCuuGg -3'
miRNA:   3'- -GGACACGCUGAa--CCGC-CCC-AAGggCg -5'
18842 3' -58 NC_004683.1 + 6950 0.66 0.620902
Target:  5'- aCUG-GCGGCg-GGCGGuGGUgcagCUCGUc -3'
miRNA:   3'- gGACaCGCUGaaCCGCC-CCAa---GGGCG- -5'
18842 3' -58 NC_004683.1 + 44907 0.67 0.55737
Target:  5'- -gUGgGCGGCagggggUGGCGGGGggCCaGCc -3'
miRNA:   3'- ggACaCGCUGa-----ACCGCCCCaaGGgCG- -5'
18842 3' -58 NC_004683.1 + 47200 0.67 0.55737
Target:  5'- --cGUGuUGAUcUGGcCGGGGgcgaaUCCCGCu -3'
miRNA:   3'- ggaCAC-GCUGaACC-GCCCCa----AGGGCG- -5'
18842 3' -58 NC_004683.1 + 12210 0.67 0.540703
Target:  5'- uCCUgGUGCGAUUcccacgcccgccggGGCGGGaGcgCCCGg -3'
miRNA:   3'- -GGA-CACGCUGAa-------------CCGCCC-CaaGGGCg -5'
18842 3' -58 NC_004683.1 + 16609 0.67 0.536562
Target:  5'- aCCUGUgGCGGC----CGGGGgaUCCGCa -3'
miRNA:   3'- -GGACA-CGCUGaaccGCCCCaaGGGCG- -5'
18842 3' -58 NC_004683.1 + 9169 0.67 0.526259
Target:  5'- uCCUGUGCuGACUggaguuucggUGGUGcGGGUggUCGUg -3'
miRNA:   3'- -GGACACG-CUGA----------ACCGC-CCCAagGGCG- -5'
18842 3' -58 NC_004683.1 + 31305 0.67 0.523183
Target:  5'- ----cGCGACUU-GCGGGGUUUgggcaggaccgccaCCGCg -3'
miRNA:   3'- ggacaCGCUGAAcCGCCCCAAG--------------GGCG- -5'
18842 3' -58 NC_004683.1 + 3128 0.68 0.485855
Target:  5'- gCCgggGUGC-ACgaGGUGGGGcagaUUCUCGCg -3'
miRNA:   3'- -GGa--CACGcUGaaCCGCCCC----AAGGGCG- -5'
18842 3' -58 NC_004683.1 + 18632 0.68 0.466211
Target:  5'- --cGUGCuGGCccUGGUGGGGUUCUuCGUg -3'
miRNA:   3'- ggaCACG-CUGa-ACCGCCCCAAGG-GCG- -5'
18842 3' -58 NC_004683.1 + 52437 0.68 0.456544
Target:  5'- aCCUGUGCGAgac-GCGcGGUgcUCCCGUg -3'
miRNA:   3'- -GGACACGCUgaacCGCcCCA--AGGGCG- -5'
18842 3' -58 NC_004683.1 + 51127 0.69 0.446986
Target:  5'- gCCaG-GCGcCUUGGCGGcGGUgCCgCGCg -3'
miRNA:   3'- -GGaCaCGCuGAACCGCC-CCAaGG-GCG- -5'
18842 3' -58 NC_004683.1 + 43819 0.69 0.446986
Target:  5'- --aGUGCGACguaaaGGCcGGGUcaucggcaccggUCCCGCc -3'
miRNA:   3'- ggaCACGCUGaa---CCGcCCCA------------AGGGCG- -5'
18842 3' -58 NC_004683.1 + 41250 0.69 0.409909
Target:  5'- gCCUGcGUGAC-UGGCuGuGGGcgCCCGUg -3'
miRNA:   3'- -GGACaCGCUGaACCG-C-CCCaaGGGCG- -5'
18842 3' -58 NC_004683.1 + 51210 0.73 0.262127
Target:  5'- aCUGgaGCGAuCUcGGCGGcGGUgCCCGCg -3'
miRNA:   3'- gGACa-CGCU-GAaCCGCC-CCAaGGGCG- -5'
18842 3' -58 NC_004683.1 + 573 1.12 0.000374
Target:  5'- aCCUGUGCGACUUGGCGGGGUUCCCGCc -3'
miRNA:   3'- -GGACACGCUGAACCGCCCCAAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.