miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18843 3' -58 NC_004683.1 + 2329 0.66 0.62027
Target:  5'- --uGUUGGCGUuCGGGGUGugGCggCGAa -3'
miRNA:   3'- gacCAGCCGCGuGCUCUACugCG--GCU- -5'
18843 3' -58 NC_004683.1 + 47010 0.66 0.609567
Target:  5'- -cGGUCaccgagccgGcGCGCACGAuGAUGGCcaacggGCCGAc -3'
miRNA:   3'- gaCCAG---------C-CGCGUGCU-CUACUG------CGGCU- -5'
18843 3' -58 NC_004683.1 + 23540 0.66 0.598882
Target:  5'- -cGGUCGGCcaguggugcgGUACGAGcucaucgugGACGUCGGc -3'
miRNA:   3'- gaCCAGCCG----------CGUGCUCua-------CUGCGGCU- -5'
18843 3' -58 NC_004683.1 + 50492 0.66 0.598882
Target:  5'- -cGGcUCGGCGCugGcGuccucGACGCUGGc -3'
miRNA:   3'- gaCC-AGCCGCGugCuCua---CUGCGGCU- -5'
18843 3' -58 NC_004683.1 + 12672 0.66 0.588224
Target:  5'- -aGGUCGGUGCcCGGGcgaucGUcGGCGCgGAu -3'
miRNA:   3'- gaCCAGCCGCGuGCUC-----UA-CUGCGgCU- -5'
18843 3' -58 NC_004683.1 + 6422 0.66 0.581845
Target:  5'- -gGGUCGcGCGCAccuguucgaaccgguCGAGGUcaAUGCCGAg -3'
miRNA:   3'- gaCCAGC-CGCGU---------------GCUCUAc-UGCGGCU- -5'
18843 3' -58 NC_004683.1 + 10728 0.66 0.567019
Target:  5'- uCUGGuaUCGGCGCgGCGGGccaaGACGCggCGAa -3'
miRNA:   3'- -GACC--AGCCGCG-UGCUCua--CUGCG--GCU- -5'
18843 3' -58 NC_004683.1 + 2370 0.67 0.555439
Target:  5'- -cGGUCGGCGacgucgcgccgauUACGGGugGUGACaCCGAc -3'
miRNA:   3'- gaCCAGCCGC-------------GUGCUC--UACUGcGGCU- -5'
18843 3' -58 NC_004683.1 + 3178 0.67 0.546015
Target:  5'- gCUGGUUGGUcauCGCGGGuacucacccGUGAUGCCGu -3'
miRNA:   3'- -GACCAGCCGc--GUGCUC---------UACUGCGGCu -5'
18843 3' -58 NC_004683.1 + 54034 0.67 0.525267
Target:  5'- cCUGGUCGGCacgaaucucGCGCaGGAUcGGCGUCa- -3'
miRNA:   3'- -GACCAGCCG---------CGUGcUCUA-CUGCGGcu -5'
18843 3' -58 NC_004683.1 + 30762 0.67 0.511941
Target:  5'- -cGG-CGGCGUucucgaccuggcggGCGAGcgcguugguGUGGCGCCGGu -3'
miRNA:   3'- gaCCaGCCGCG--------------UGCUC---------UACUGCGGCU- -5'
18843 3' -58 NC_004683.1 + 11116 0.67 0.504824
Target:  5'- aUGGUCGGCGU-CGGGGUGAuuCGUg-- -3'
miRNA:   3'- gACCAGCCGCGuGCUCUACU--GCGgcu -5'
18843 3' -58 NC_004683.1 + 6881 0.67 0.504824
Target:  5'- gCUGGaCGGCGCGCGAc--GGCGCg-- -3'
miRNA:   3'- -GACCaGCCGCGUGCUcuaCUGCGgcu -5'
18843 3' -58 NC_004683.1 + 10829 0.68 0.474829
Target:  5'- -cGGaUUGGCGCugGccGGUGugGCCa- -3'
miRNA:   3'- gaCC-AGCCGCGugCu-CUACugCGGcu -5'
18843 3' -58 NC_004683.1 + 52258 0.68 0.474829
Target:  5'- -cGGcaccaaGGCGCACGAGcucGACGCCu- -3'
miRNA:   3'- gaCCag----CCGCGUGCUCua-CUGCGGcu -5'
18843 3' -58 NC_004683.1 + 31915 0.68 0.474829
Target:  5'- -aGGUucagcagcgCGG-GCACGAGAUcuGCGCCGAg -3'
miRNA:   3'- gaCCA---------GCCgCGUGCUCUAc-UGCGGCU- -5'
18843 3' -58 NC_004683.1 + 11768 0.68 0.473845
Target:  5'- -cGG-CGaGCGCGCGGucgaaucGGUGAaCGCCGAa -3'
miRNA:   3'- gaCCaGC-CGCGUGCU-------CUACU-GCGGCU- -5'
18843 3' -58 NC_004683.1 + 24386 0.68 0.455335
Target:  5'- gUGGU-GGUGaACGAGGcuggcaccccguUGACGCCGAa -3'
miRNA:   3'- gACCAgCCGCgUGCUCU------------ACUGCGGCU- -5'
18843 3' -58 NC_004683.1 + 40470 0.68 0.454372
Target:  5'- -aGuGUCGGCGCgugcacaccgccgAgGGGGUGAgCGCCGGa -3'
miRNA:   3'- gaC-CAGCCGCG-------------UgCUCUACU-GCGGCU- -5'
18843 3' -58 NC_004683.1 + 5429 0.68 0.444799
Target:  5'- gCUGG-CGGCGCgccugccguGCGuGAUGGaucagguCGCCGAu -3'
miRNA:   3'- -GACCaGCCGCG---------UGCuCUACU-------GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.