miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18843 5' -49.5 NC_004683.1 + 12569 0.66 0.964979
Target:  5'- --aCAACGACCUCGgcauuuCCgagGGUCu -3'
miRNA:   3'- uaaGUUGCUGGAGCacuu--GGa--CUAGc -5'
18843 5' -49.5 NC_004683.1 + 44854 0.66 0.961194
Target:  5'- -gUCGGCGACCUgcUGcUGuGCUUGGUCa -3'
miRNA:   3'- uaAGUUGCUGGA--GC-ACuUGGACUAGc -5'
18843 5' -49.5 NC_004683.1 + 49105 0.66 0.961194
Target:  5'- -aUCcuCGGCgUCGUcGACUUGGUCGa -3'
miRNA:   3'- uaAGuuGCUGgAGCAcUUGGACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 28146 0.66 0.95629
Target:  5'- -gUCGGCGACCUCGaacaucaccCCUGAcgCGg -3'
miRNA:   3'- uaAGUUGCUGGAGCacuu-----GGACUa-GC- -5'
18843 5' -49.5 NC_004683.1 + 46529 0.66 0.952797
Target:  5'- -aUCGGCaACCUUcuUGAcgGCCUGGUCGg -3'
miRNA:   3'- uaAGUUGcUGGAGc-ACU--UGGACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 21763 0.67 0.943256
Target:  5'- gGUUCAACGACCgCGgccACCgaugguUGGUCGg -3'
miRNA:   3'- -UAAGUUGCUGGaGCacuUGG------ACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 51351 0.67 0.938046
Target:  5'- --aCGuUGGCCUCGUccuguaGAGCCUcGAUCGa -3'
miRNA:   3'- uaaGUuGCUGGAGCA------CUUGGA-CUAGC- -5'
18843 5' -49.5 NC_004683.1 + 40349 0.67 0.938046
Target:  5'- -cUCGACG-CCUCGg--GCCUGAcCGa -3'
miRNA:   3'- uaAGUUGCuGGAGCacuUGGACUaGC- -5'
18843 5' -49.5 NC_004683.1 + 37313 0.67 0.93254
Target:  5'- cUUCGGCGGCgUCGuUGAACCcGuccUCGg -3'
miRNA:   3'- uAAGUUGCUGgAGC-ACUUGGaCu--AGC- -5'
18843 5' -49.5 NC_004683.1 + 36188 0.67 0.920632
Target:  5'- -gUCggUGACCUUguaGUGcAACgUGAUCGg -3'
miRNA:   3'- uaAGuuGCUGGAG---CAC-UUGgACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 3331 0.68 0.893259
Target:  5'- -cUCAgccGCGGCCaggUCGcggcGGGCCUGAUCGc -3'
miRNA:   3'- uaAGU---UGCUGG---AGCa---CUUGGACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 45578 0.68 0.893259
Target:  5'- -gUCAA-GGCgCUCGuUGAcgGCCUGGUCGa -3'
miRNA:   3'- uaAGUUgCUG-GAGC-ACU--UGGACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 50742 0.69 0.877844
Target:  5'- -cUCGAUGACCUgGUGGG-CUGGUUa -3'
miRNA:   3'- uaAGUUGCUGGAgCACUUgGACUAGc -5'
18843 5' -49.5 NC_004683.1 + 41104 0.69 0.861335
Target:  5'- -cUCAGCGGCCUCagcGGCCUGGcCGa -3'
miRNA:   3'- uaAGUUGCUGGAGcacUUGGACUaGC- -5'
18843 5' -49.5 NC_004683.1 + 2987 0.7 0.824343
Target:  5'- cUUCGacacgguGCGACa--GUGAACCUGGUCa -3'
miRNA:   3'- uAAGU-------UGCUGgagCACUUGGACUAGc -5'
18843 5' -49.5 NC_004683.1 + 12916 0.71 0.785749
Target:  5'- -gUCGAgGAUCUCGUcAACCUGcUCGa -3'
miRNA:   3'- uaAGUUgCUGGAGCAcUUGGACuAGC- -5'
18843 5' -49.5 NC_004683.1 + 52201 0.71 0.775402
Target:  5'- -cUCGGCGAUCUgcuccauccgggCGUGGACCUcGUCGg -3'
miRNA:   3'- uaAGUUGCUGGA------------GCACUUGGAcUAGC- -5'
18843 5' -49.5 NC_004683.1 + 14306 0.71 0.764895
Target:  5'- cGUUCAuCGACCUCGauacGGGCCgcuggUGGUCGg -3'
miRNA:   3'- -UAAGUuGCUGGAGCa---CUUGG-----ACUAGC- -5'
18843 5' -49.5 NC_004683.1 + 9423 0.73 0.630972
Target:  5'- cAUUCGGCGACCacggUCGUGcAGCCaggGAUCa -3'
miRNA:   3'- -UAAGUUGCUGG----AGCAC-UUGGa--CUAGc -5'
18843 5' -49.5 NC_004683.1 + 51383 0.77 0.444343
Target:  5'- -cUCGACGACCgCGUGAGCCaGggCGa -3'
miRNA:   3'- uaAGUUGCUGGaGCACUUGGaCuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.