miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18844 3' -59.1 NC_004683.1 + 42279 0.66 0.49782
Target:  5'- cGAGGGCguGGCCUCAUgaCGcgGGCGcUGUg -3'
miRNA:   3'- -CUCCUG--CCGGGGUG--GUuaCCGC-ACAa -5'
18844 3' -59.1 NC_004683.1 + 12939 0.66 0.48765
Target:  5'- cGAcGGCcGCCCCACCGGUGGCc---- -3'
miRNA:   3'- -CUcCUGcCGGGGUGGUUACCGcacaa -5'
18844 3' -59.1 NC_004683.1 + 26381 0.67 0.448009
Target:  5'- cGAGGGCGcGCCUCACCugaaGGaUGUGg- -3'
miRNA:   3'- -CUCCUGC-CGGGGUGGuua-CC-GCACaa -5'
18844 3' -59.1 NC_004683.1 + 8537 0.67 0.428868
Target:  5'- cAGGGCGGCCaccgCACCGgccugaucgccGUGGCGUu-- -3'
miRNA:   3'- cUCCUGCCGGg---GUGGU-----------UACCGCAcaa -5'
18844 3' -59.1 NC_004683.1 + 4769 0.67 0.428868
Target:  5'- cGAcGACGGCCUCAUCGA--GCGUGUc -3'
miRNA:   3'- -CUcCUGCCGGGGUGGUUacCGCACAa -5'
18844 3' -59.1 NC_004683.1 + 868 0.67 0.410218
Target:  5'- cGAGGACgauGGCCCauUCAcUGGCGUGg- -3'
miRNA:   3'- -CUCCUG---CCGGGguGGUuACCGCACaa -5'
18844 3' -59.1 NC_004683.1 + 44911 0.67 0.409299
Target:  5'- -uGGACGGCCggacgguUCACCAGUGGCc---- -3'
miRNA:   3'- cuCCUGCCGG-------GGUGGUUACCGcacaa -5'
18844 3' -59.1 NC_004683.1 + 23413 0.73 0.180619
Target:  5'- cGAGGGCGGCuggacuCCCACCAacaguGUGGCGa--- -3'
miRNA:   3'- -CUCCUGCCG------GGGUGGU-----UACCGCacaa -5'
18844 3' -59.1 NC_004683.1 + 39623 0.73 0.171202
Target:  5'- cGGGGugGGCgCCGCCGggGUGGCGa--- -3'
miRNA:   3'- -CUCCugCCGgGGUGGU--UACCGCacaa -5'
18844 3' -59.1 NC_004683.1 + 45970 0.74 0.149556
Target:  5'- cGAGcGACuGGCCCCACCcauUGGCGUa-- -3'
miRNA:   3'- -CUC-CUG-CCGGGGUGGuu-ACCGCAcaa -5'
18844 3' -59.1 NC_004683.1 + 859 1.04 0.000843
Target:  5'- gGAGGACGGCCCCACCAAUGGCGUGUUc -3'
miRNA:   3'- -CUCCUGCCGGGGUGGUUACCGCACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.