miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18844 5' -54.7 NC_004683.1 + 33863 0.67 0.681764
Target:  5'- cCACCGcAGGCCAUCaa---GGAGCUGg -3'
miRNA:   3'- cGUGGC-UCCGGUAGcguaaCUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 5644 0.68 0.626733
Target:  5'- uCACCGAGaCCGUCGCGcUGcuguucGCCGa -3'
miRNA:   3'- cGUGGCUCcGGUAGCGUaACuu----CGGC- -5'
18844 5' -54.7 NC_004683.1 + 50354 0.68 0.626733
Target:  5'- cGCGCCGAGcUgAUCGCGaUG-GGCCGc -3'
miRNA:   3'- -CGUGGCUCcGgUAGCGUaACuUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 25481 0.68 0.631148
Target:  5'- cCACCGcggcgcuGGCCGUCGCcGUcuucuacggcgugguUGAAGCUGa -3'
miRNA:   3'- cGUGGCu------CCGGUAGCG-UA---------------ACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 12031 0.68 0.648802
Target:  5'- cGCGCCcgcgcGGGGCUAcCGCcg-GAGGCUGg -3'
miRNA:   3'- -CGUGG-----CUCCGGUaGCGuaaCUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 55898 0.68 0.648802
Target:  5'- cCACCGuauucaAGGCCAacgagCGCAacccgUGGAGCUGg -3'
miRNA:   3'- cGUGGC------UCCGGUa----GCGUa----ACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 56055 0.68 0.648802
Target:  5'- gGUugCGAGGCCAaccaccgcCGCGUcUGgcGCUGg -3'
miRNA:   3'- -CGugGCUCCGGUa-------GCGUA-ACuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 6560 0.67 0.67081
Target:  5'- gGCGCCGGccgagaacGGCgAUgGCGgaacUGAAGCCu -3'
miRNA:   3'- -CGUGGCU--------CCGgUAgCGUa---ACUUCGGc -5'
18844 5' -54.7 NC_004683.1 + 44735 0.67 0.67081
Target:  5'- aCGCCGAGGCCGacaaGCuc-GucGCCGa -3'
miRNA:   3'- cGUGGCUCCGGUag--CGuaaCuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 16518 0.68 0.62563
Target:  5'- uCACCGGgcguGGCCAagacgguUCGCA-UGGAGUCGu -3'
miRNA:   3'- cGUGGCU----CCGGU-------AGCGUaACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 46075 0.68 0.604683
Target:  5'- uCGCCGAGGCgCAcCGCuaccAGGCCGu -3'
miRNA:   3'- cGUGGCUCCG-GUaGCGuaacUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 30508 0.69 0.582727
Target:  5'- -uGCCGAGGUggaUGUCGC--UGAGGCUGa -3'
miRNA:   3'- cgUGGCUCCG---GUAGCGuaACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 11983 0.74 0.291648
Target:  5'- aCACCGGGGCUGUCGCcc-GAucagcuAGCCGg -3'
miRNA:   3'- cGUGGCUCCGGUAGCGuaaCU------UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 20454 0.73 0.363459
Target:  5'- cGCGCCGAuGGCCGgcgaGCGga-AAGCCGg -3'
miRNA:   3'- -CGUGGCU-CCGGUag--CGUaacUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 8161 0.72 0.427231
Target:  5'- gGCGCCGAGGCCG-CGa----AGGCCGc -3'
miRNA:   3'- -CGUGGCUCCGGUaGCguaacUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 40242 0.72 0.427231
Target:  5'- cGCGCCGAGcugcaggcGCgCGUCGaugaGUUGGAGUCGg -3'
miRNA:   3'- -CGUGGCUC--------CG-GUAGCg---UAACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 53112 0.71 0.47663
Target:  5'- -gGCCGGGGCguUCGuCGUUGGAGgUGa -3'
miRNA:   3'- cgUGGCUCCGguAGC-GUAACUUCgGC- -5'
18844 5' -54.7 NC_004683.1 + 4963 0.7 0.507593
Target:  5'- cGCGUCGAGGCCGguuccUCGCAg-GgcGCCGu -3'
miRNA:   3'- -CGUGGCUCCGGU-----AGCGUaaCuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 41456 0.7 0.539376
Target:  5'- cGCACCGAGGCCggggagaucGUCGCcac-GAGCg- -3'
miRNA:   3'- -CGUGGCUCCGG---------UAGCGuaacUUCGgc -5'
18844 5' -54.7 NC_004683.1 + 4323 0.69 0.578354
Target:  5'- uCGCCGAGGCCGUauucauugcggaUGCGgucucacaggacGAAGCCGc -3'
miRNA:   3'- cGUGGCUCCGGUA------------GCGUaa----------CUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.