miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18845 3' -57 NC_004683.1 + 20302 0.66 0.634327
Target:  5'- gGCCGGGgcg-GCGAcGGCGGCAGc-- -3'
miRNA:   3'- -CGGCCCauagCGCUcCUGCCGUUcua -5'
18845 3' -57 NC_004683.1 + 3127 0.66 0.623454
Target:  5'- cGCCGGGgugCaCGAGGugGGgcAGAUu -3'
miRNA:   3'- -CGGCCCauaGcGCUCCugCCguUCUA- -5'
18845 3' -57 NC_004683.1 + 264 0.66 0.623454
Target:  5'- gGCgGGGcugGUCGCGAcGGugGuCAAGGa -3'
miRNA:   3'- -CGgCCCa--UAGCGCU-CCugCcGUUCUa -5'
18845 3' -57 NC_004683.1 + 15228 0.66 0.601739
Target:  5'- cGCgCGGGUAggucaucggcUCGgGcAGGucucGCGGCGAGGUg -3'
miRNA:   3'- -CG-GCCCAU----------AGCgC-UCC----UGCCGUUCUA- -5'
18845 3' -57 NC_004683.1 + 26139 0.67 0.590915
Target:  5'- aUCGGGUAUCGCcGGcGCGGCGGu-- -3'
miRNA:   3'- cGGCCCAUAGCGcUCcUGCCGUUcua -5'
18845 3' -57 NC_004683.1 + 20243 0.67 0.569377
Target:  5'- uGCCGGGUAUcggCGCGAucagcaACGGCGucGGAUu -3'
miRNA:   3'- -CGGCCCAUA---GCGCUcc----UGCCGU--UCUA- -5'
18845 3' -57 NC_004683.1 + 52350 0.68 0.526957
Target:  5'- gGCCGG----UGCGAGGGugcacCGGCAGGGUg -3'
miRNA:   3'- -CGGCCcauaGCGCUCCU-----GCCGUUCUA- -5'
18845 3' -57 NC_004683.1 + 7965 0.68 0.495933
Target:  5'- gGUCGGGcu---UGAGGGCGGCGGGAUc -3'
miRNA:   3'- -CGGCCCauagcGCUCCUGCCGUUCUA- -5'
18845 3' -57 NC_004683.1 + 53370 0.69 0.433711
Target:  5'- gGUCGGuGUAUCGCucgacgccgacgcgGAcacgccGGGCGGCAAGAg -3'
miRNA:   3'- -CGGCC-CAUAGCG--------------CU------CCUGCCGUUCUa -5'
18845 3' -57 NC_004683.1 + 6499 0.71 0.323397
Target:  5'- aGCCGGGUcaccugCGCucGGugGGCAAGc- -3'
miRNA:   3'- -CGGCCCAua----GCGcuCCugCCGUUCua -5'
18845 3' -57 NC_004683.1 + 30803 0.73 0.272143
Target:  5'- cGCCGGuucaugAUCGCGAGGAuCaGCGAGAc -3'
miRNA:   3'- -CGGCCca----UAGCGCUCCU-GcCGUUCUa -5'
18845 3' -57 NC_004683.1 + 44889 0.75 0.179588
Target:  5'- uGCCGGGgc-CGCGcucagguGGGCGGCAGGGg -3'
miRNA:   3'- -CGGCCCauaGCGCu------CCUGCCGUUCUa -5'
18845 3' -57 NC_004683.1 + 13085 0.78 0.12963
Target:  5'- cGCCGGGUGUCGCGguAGGGCa-CGAGGUa -3'
miRNA:   3'- -CGGCCCAUAGCGC--UCCUGccGUUCUA- -5'
18845 3' -57 NC_004683.1 + 1536 1.07 0.001026
Target:  5'- gGCCGGGUAUCGCGAGGACGGCAAGAUc -3'
miRNA:   3'- -CGGCCCAUAGCGCUCCUGCCGUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.