miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18845 5' -64 NC_004683.1 + 15191 0.66 0.343497
Target:  5'- -uAUCGaacccacuUCUCGGC-GUCgGCGGCGGUa -3'
miRNA:   3'- cuUAGC--------AGGGCCGcCGGgCGCCGCCG- -5'
18845 5' -64 NC_004683.1 + 51132 0.66 0.343497
Target:  5'- ---gCGcCuuGGCGGCggugCCGCG-CGGCg -3'
miRNA:   3'- cuuaGCaGggCCGCCG----GGCGCcGCCG- -5'
18845 5' -64 NC_004683.1 + 21557 0.66 0.343497
Target:  5'- uGAUCcugCUgGGCGG-CgGCGGUGGCg -3'
miRNA:   3'- cUUAGca-GGgCCGCCgGgCGCCGCCG- -5'
18845 5' -64 NC_004683.1 + 33952 0.66 0.343497
Target:  5'- uGGAUCGgccggCaCCGGUccccGCUCGCGGUGGa -3'
miRNA:   3'- -CUUAGCa----G-GGCCGc---CGGGCGCCGCCg -5'
18845 5' -64 NC_004683.1 + 6939 0.66 0.343497
Target:  5'- cGAggCGgccgaCUGGCGGCggGCGGUGGUg -3'
miRNA:   3'- -CUuaGCag---GGCCGCCGggCGCCGCCG- -5'
18845 5' -64 NC_004683.1 + 10049 0.66 0.343497
Target:  5'- ---cCGagCCGuuCGG-CCGCGGCGGCg -3'
miRNA:   3'- cuuaGCagGGCc-GCCgGGCGCCGCCG- -5'
18845 5' -64 NC_004683.1 + 19791 0.66 0.335824
Target:  5'- uGAGUCGUCacaaCGGCcGCUaucuagCGCGGgCGGUc -3'
miRNA:   3'- -CUUAGCAGg---GCCGcCGG------GCGCC-GCCG- -5'
18845 5' -64 NC_004683.1 + 6973 0.66 0.33128
Target:  5'- --cUCGUCggCCGGCGGCCCagacgucgagaccgaGC-GCGGa -3'
miRNA:   3'- cuuAGCAG--GGCCGCCGGG---------------CGcCGCCg -5'
18845 5' -64 NC_004683.1 + 9764 0.66 0.328277
Target:  5'- ----gGUCUCGcGCGGCCgGUGG-GGUg -3'
miRNA:   3'- cuuagCAGGGC-CGCCGGgCGCCgCCG- -5'
18845 5' -64 NC_004683.1 + 23127 0.66 0.328277
Target:  5'- cGGUgGUCCCGGCGaCCgCGCGaGCucGCa -3'
miRNA:   3'- cUUAgCAGGGCCGCcGG-GCGC-CGc-CG- -5'
18845 5' -64 NC_004683.1 + 12377 0.66 0.328277
Target:  5'- --cUCGUCgaacgugaggUCGGCGGCgCGC-GUGGCu -3'
miRNA:   3'- cuuAGCAG----------GGCCGCCGgGCGcCGCCG- -5'
18845 5' -64 NC_004683.1 + 44331 0.66 0.328277
Target:  5'- ---gCGggCCCagcaGCGGCgCCGCGGCcaGGCu -3'
miRNA:   3'- cuuaGCa-GGGc---CGCCG-GGCGCCG--CCG- -5'
18845 5' -64 NC_004683.1 + 37285 0.66 0.328277
Target:  5'- cGGAUUGUCuuGGUGGgUgcggagcgauugCGCGGCgcGGCg -3'
miRNA:   3'- -CUUAGCAGggCCGCCgG------------GCGCCG--CCG- -5'
18845 5' -64 NC_004683.1 + 43230 0.66 0.323809
Target:  5'- -uGUUG-CCCGGCGGUguuuggcagcgcaggCCGCGcacCGGCg -3'
miRNA:   3'- cuUAGCaGGGCCGCCG---------------GGCGCc--GCCG- -5'
18845 5' -64 NC_004683.1 + 18654 0.66 0.320856
Target:  5'- --uUCGUgCCCGGCGaCCuCG-GuGCGGCg -3'
miRNA:   3'- cuuAGCA-GGGCCGCcGG-GCgC-CGCCG- -5'
18845 5' -64 NC_004683.1 + 12018 0.66 0.313561
Target:  5'- cGAcgCGggCCaGCGcGCCCGCGcGgGGCu -3'
miRNA:   3'- -CUuaGCagGGcCGC-CGGGCGC-CgCCG- -5'
18845 5' -64 NC_004683.1 + 23448 0.66 0.313561
Target:  5'- -cGUCGaaccaUCUCGGCGGCaCCGCGaUGGa -3'
miRNA:   3'- cuUAGC-----AGGGCCGCCG-GGCGCcGCCg -5'
18845 5' -64 NC_004683.1 + 54990 0.66 0.306393
Target:  5'- ---gCGUCaucgagcgcgUCGGCGGCCuCGaucccgcauuCGGCGGCu -3'
miRNA:   3'- cuuaGCAG----------GGCCGCCGG-GC----------GCCGCCG- -5'
18845 5' -64 NC_004683.1 + 39617 0.66 0.306393
Target:  5'- ---cCGUUCCGGggugGGCgCCGCcggGGUGGCg -3'
miRNA:   3'- cuuaGCAGGGCCg---CCG-GGCG---CCGCCG- -5'
18845 5' -64 NC_004683.1 + 17343 0.66 0.306393
Target:  5'- cGggUCGccacCCCGGCGGCgCCcacccCGGaacgGGCg -3'
miRNA:   3'- -CuuAGCa---GGGCCGCCG-GGc----GCCg---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.