miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18846 3' -60.8 NC_004683.1 + 17008 0.65 0.444141
Target:  5'- cGACGCGAGucaccagccggcgaGCGCcaaccUGCACCcaCCGCAa-- -3'
miRNA:   3'- -CUGCGCUC--------------CGCG-----ACGUGG--GGCGUacu -5'
18846 3' -60.8 NC_004683.1 + 11509 0.66 0.437541
Target:  5'- cGCGCGAGaaGUGCUGCggcggugcggACCUCGCGa-- -3'
miRNA:   3'- cUGCGCUC--CGCGACG----------UGGGGCGUacu -5'
18846 3' -60.8 NC_004683.1 + 36652 0.66 0.428211
Target:  5'- cGCGCGGGacaugaacGCGCUGCcgccgucgccGCCCCgGCcgGGu -3'
miRNA:   3'- cUGCGCUC--------CGCGACG----------UGGGG-CGuaCU- -5'
18846 3' -60.8 NC_004683.1 + 50004 0.66 0.428211
Target:  5'- gGGCGCGccGGCcgacgaGCUGCACCaCCGCc--- -3'
miRNA:   3'- -CUGCGCu-CCG------CGACGUGG-GGCGuacu -5'
18846 3' -60.8 NC_004683.1 + 10608 0.66 0.42821
Target:  5'- cGCGCuGAGGUGCggGCGgUCCGCGa-- -3'
miRNA:   3'- cUGCG-CUCCGCGa-CGUgGGGCGUacu -5'
18846 3' -60.8 NC_004683.1 + 46011 0.66 0.409909
Target:  5'- --gGCGAGGUGCUGC-CCgaCGCGg-- -3'
miRNA:   3'- cugCGCUCCGCGACGuGGg-GCGUacu -5'
18846 3' -60.8 NC_004683.1 + 5762 0.66 0.409909
Target:  5'- cGACGCcacaGGGGCGCUcGCGCUCgUGCggGGc -3'
miRNA:   3'- -CUGCG----CUCCGCGA-CGUGGG-GCGuaCU- -5'
18846 3' -60.8 NC_004683.1 + 12018 0.66 0.400942
Target:  5'- cGACGCG-GGCcaGC-GCGCCCgCGCggGGc -3'
miRNA:   3'- -CUGCGCuCCG--CGaCGUGGG-GCGuaCU- -5'
18846 3' -60.8 NC_004683.1 + 239 0.66 0.392102
Target:  5'- -cCGCGAuGCcgccGCUGCugCCCGCGgcgGGg -3'
miRNA:   3'- cuGCGCUcCG----CGACGugGGGCGUa--CU- -5'
18846 3' -60.8 NC_004683.1 + 21708 0.67 0.374806
Target:  5'- uGCGgGuGGCGCUgGCAgCgCCGCcgGAu -3'
miRNA:   3'- cUGCgCuCCGCGA-CGUgG-GGCGuaCU- -5'
18846 3' -60.8 NC_004683.1 + 49331 0.67 0.358034
Target:  5'- uGCGCGcuGUGCgGCugCCCGCAc-- -3'
miRNA:   3'- cUGCGCucCGCGaCGugGGGCGUacu -5'
18846 3' -60.8 NC_004683.1 + 44740 0.67 0.358034
Target:  5'- cACGCcGGGCGCUccCGCCCCggcggGCGUGGg -3'
miRNA:   3'- cUGCGcUCCGCGAc-GUGGGG-----CGUACU- -5'
18846 3' -60.8 NC_004683.1 + 12230 0.67 0.349847
Target:  5'- -cCGcCGGGGCgGgaGCGCCCgGCGUGc -3'
miRNA:   3'- cuGC-GCUCCG-CgaCGUGGGgCGUACu -5'
18846 3' -60.8 NC_004683.1 + 3384 0.67 0.341795
Target:  5'- aGACGCGGccGGCGgUGCGgCCgGCGUc- -3'
miRNA:   3'- -CUGCGCU--CCGCgACGUgGGgCGUAcu -5'
18846 3' -60.8 NC_004683.1 + 12530 0.68 0.333877
Target:  5'- cGGCGCGGuGGCGC-GCugCgCGCGUu- -3'
miRNA:   3'- -CUGCGCU-CCGCGaCGugGgGCGUAcu -5'
18846 3' -60.8 NC_004683.1 + 14873 0.68 0.318447
Target:  5'- uGAUGCGuucgcGGGUGCUGCugAUCCCGCcgaucGUGGg -3'
miRNA:   3'- -CUGCGC-----UCCGCGACG--UGGGGCG-----UACU- -5'
18846 3' -60.8 NC_004683.1 + 44952 0.68 0.30356
Target:  5'- cGCGCGGGcGCGCUGg--CCCGCGUcGAu -3'
miRNA:   3'- cUGCGCUC-CGCGACgugGGGCGUA-CU- -5'
18846 3' -60.8 NC_004683.1 + 12726 0.68 0.303559
Target:  5'- cGCGCGGGGCGCguuCGgUCCGCAg-- -3'
miRNA:   3'- cUGCGCUCCGCGac-GUgGGGCGUacu -5'
18846 3' -60.8 NC_004683.1 + 46915 0.69 0.262127
Target:  5'- -cCGCGAGGCGCUGCcgaCgUGCAcGAc -3'
miRNA:   3'- cuGCGCUCCGCGACGug-GgGCGUaCU- -5'
18846 3' -60.8 NC_004683.1 + 51163 0.7 0.248129
Target:  5'- cGugGCGGaacuggauccGGCGCgccgccgagaacGCGCCCCGCAcGAg -3'
miRNA:   3'- -CugCGCU----------CCGCGa-----------CGUGGGGCGUaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.