miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18847 3' -60.2 NC_004683.1 + 7595 0.66 0.455933
Target:  5'- ----cGGGCGGUuCGuAUCCGGGGCAg -3'
miRNA:   3'- accuuCCCGCCGuGC-UGGGUCCUGUa -5'
18847 3' -60.2 NC_004683.1 + 5104 0.66 0.446309
Target:  5'- aGGucAAGGGCGaGCuGCGugCCcGGGCGc -3'
miRNA:   3'- aCC--UUCCCGC-CG-UGCugGGuCCUGUa -5'
18847 3' -60.2 NC_004683.1 + 5913 0.66 0.408989
Target:  5'- ---cAGGGCGGCGCGggACUguGGACc- -3'
miRNA:   3'- accuUCCCGCCGUGC--UGGguCCUGua -5'
18847 3' -60.2 NC_004683.1 + 47417 0.67 0.399967
Target:  5'- cGGAugucGCGGCGCGGCagcgcaaggCCGGGACGa -3'
miRNA:   3'- aCCUucc-CGCCGUGCUG---------GGUCCUGUa -5'
18847 3' -60.2 NC_004683.1 + 15666 0.68 0.340493
Target:  5'- cUGGgcGGGUGGCGCGGugaggCCGGGuaGCAg -3'
miRNA:   3'- -ACCuuCCCGCCGUGCUg----GGUCC--UGUa -5'
18847 3' -60.2 NC_004683.1 + 5231 0.68 0.309495
Target:  5'- cGGcGAGGGCGGCGCGGCaCuGGuCGc -3'
miRNA:   3'- aCC-UUCCCGCCGUGCUGgGuCCuGUa -5'
18847 3' -60.2 NC_004683.1 + 13463 0.69 0.29482
Target:  5'- cGcGcAGGGUGGCgGCGGCuuCCAGGGCGUg -3'
miRNA:   3'- aC-CuUCCCGCCG-UGCUG--GGUCCUGUA- -5'
18847 3' -60.2 NC_004683.1 + 37068 0.72 0.191457
Target:  5'- cGGuucGGGCGGCGauGCCCAGGuCAUc -3'
miRNA:   3'- aCCuu-CCCGCCGUgcUGGGUCCuGUA- -5'
18847 3' -60.2 NC_004683.1 + 20395 0.72 0.172272
Target:  5'- cUGGcAGcuGGCGGCGC-ACCCGGGGCGg -3'
miRNA:   3'- -ACCuUC--CCGCCGUGcUGGGUCCUGUa -5'
18847 3' -60.2 NC_004683.1 + 37615 0.73 0.163338
Target:  5'- cUGGu-GGGCGGCAUGGCCCAucucuuGGAUc- -3'
miRNA:   3'- -ACCuuCCCGCCGUGCUGGGU------CCUGua -5'
18847 3' -60.2 NC_004683.1 + 2603 1.06 0.000501
Target:  5'- aUGGAAGGGCGGCACGACCCAGGACAUg -3'
miRNA:   3'- -ACCUUCCCGCCGUGCUGGGUCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.