miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18847 5' -57.1 NC_004683.1 + 25444 0.66 0.665914
Target:  5'- gGCGUGG-CC--GACGCCGACaccaugucGGCCu -3'
miRNA:   3'- -CGUACUaGGucCUGCGGCUGga------CCGG- -5'
18847 5' -57.1 NC_004683.1 + 39626 0.66 0.665914
Target:  5'- -gGUGGgcgccgCCGGGGUGgCGACCcgagGGCCg -3'
miRNA:   3'- cgUACUa-----GGUCCUGCgGCUGGa---CCGG- -5'
18847 5' -57.1 NC_004683.1 + 52211 0.66 0.665914
Target:  5'- uGCuccAUCCGGG-CGUgGACCUcgucGGCCc -3'
miRNA:   3'- -CGuacUAGGUCCuGCGgCUGGA----CCGG- -5'
18847 5' -57.1 NC_004683.1 + 32513 0.66 0.659463
Target:  5'- cGCGguguaGAUCCAgaucuugcggcgcucGGugGCCGgcgGCUUGGUCc -3'
miRNA:   3'- -CGUa----CUAGGU---------------CCugCGGC---UGGACCGG- -5'
18847 5' -57.1 NC_004683.1 + 947 0.66 0.655157
Target:  5'- cGCGUGAUCUucaAGGcGCGCaccaacaguggUGGCCgUGGCUu -3'
miRNA:   3'- -CGUACUAGG---UCC-UGCG-----------GCUGG-ACCGG- -5'
18847 5' -57.1 NC_004683.1 + 25307 0.66 0.655157
Target:  5'- uGCAUGcUCgCAGG-CGugauacCCGACCaucagGGCCg -3'
miRNA:   3'- -CGUACuAG-GUCCuGC------GGCUGGa----CCGG- -5'
18847 5' -57.1 NC_004683.1 + 49812 0.66 0.650848
Target:  5'- cGCAcccGUCuCAGcGACGCCcaccaacgccacaACCUGGCCg -3'
miRNA:   3'- -CGUac-UAG-GUC-CUGCGGc------------UGGACCGG- -5'
18847 5' -57.1 NC_004683.1 + 34519 0.66 0.644379
Target:  5'- aGgGUGAacagcgacaccUCCAGcccauacgcgccGuCGCCGACCaGGCCg -3'
miRNA:   3'- -CgUACU-----------AGGUC------------CuGCGGCUGGaCCGG- -5'
18847 5' -57.1 NC_004683.1 + 44136 0.66 0.644379
Target:  5'- aGCGgccugCCGGGACGuuGGCCagcaGcGCCg -3'
miRNA:   3'- -CGUacua-GGUCCUGCggCUGGa---C-CGG- -5'
18847 5' -57.1 NC_004683.1 + 15205 0.66 0.641144
Target:  5'- uGUAUGggCCGGGAacguucaaguucgcUGCCGcGCCcgGGUCg -3'
miRNA:   3'- -CGUACuaGGUCCU--------------GCGGC-UGGa-CCGG- -5'
18847 5' -57.1 NC_004683.1 + 7373 0.66 0.633591
Target:  5'- gGCAccGAgcacCCGGaGGCGCuCGACCUggauucggcGGCCg -3'
miRNA:   3'- -CGUa-CUa---GGUC-CUGCG-GCUGGA---------CCGG- -5'
18847 5' -57.1 NC_004683.1 + 13476 0.66 0.633591
Target:  5'- gGCGgcuUCCAGGGCGUgucgGGCCUG-CCg -3'
miRNA:   3'- -CGUacuAGGUCCUGCGg---CUGGACcGG- -5'
18847 5' -57.1 NC_004683.1 + 26465 0.66 0.622802
Target:  5'- ---cGAUCCAGGcCGCCcGCC-GaGCCc -3'
miRNA:   3'- cguaCUAGGUCCuGCGGcUGGaC-CGG- -5'
18847 5' -57.1 NC_004683.1 + 26424 0.66 0.622802
Target:  5'- -gGUGcccgCCGGuGcCGCCGAgUUGGCCg -3'
miRNA:   3'- cgUACua--GGUC-CuGCGGCUgGACCGG- -5'
18847 5' -57.1 NC_004683.1 + 9739 0.66 0.622802
Target:  5'- -aGUGAUUCGGcGACGacaCCGACgaGGUCu -3'
miRNA:   3'- cgUACUAGGUC-CUGC---GGCUGgaCCGG- -5'
18847 5' -57.1 NC_004683.1 + 51513 0.66 0.622802
Target:  5'- aCAUcg-CCGGuGGCGaCGACCUGGCg -3'
miRNA:   3'- cGUAcuaGGUC-CUGCgGCUGGACCGg -5'
18847 5' -57.1 NC_004683.1 + 9457 0.66 0.619566
Target:  5'- cGCA-GAUCggaaGGGACaacugggcagucauGCCGGCCUccacGGCCc -3'
miRNA:   3'- -CGUaCUAGg---UCCUG--------------CGGCUGGA----CCGG- -5'
18847 5' -57.1 NC_004683.1 + 53716 0.66 0.61202
Target:  5'- aCAUGGUgCGGcugcgguaaguGcACGCCGACC-GGCCc -3'
miRNA:   3'- cGUACUAgGUC-----------C-UGCGGCUGGaCCGG- -5'
18847 5' -57.1 NC_004683.1 + 8132 0.67 0.605558
Target:  5'- cCGUGAUCCAacuGGacuucuacgcgcucgGCGCCGagGCCgcgaaGGCCg -3'
miRNA:   3'- cGUACUAGGU---CC---------------UGCGGC--UGGa----CCGG- -5'
18847 5' -57.1 NC_004683.1 + 44849 0.67 0.601255
Target:  5'- cGCAaucgCCGuGGugGcCCGGCCUggaGGCCg -3'
miRNA:   3'- -CGUacuaGGU-CCugC-GGCUGGA---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.