miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18848 3' -60.6 NC_004683.1 + 12237 0.66 0.498293
Target:  5'- gGCGgGagcGCCCGgcGuGCCGauGCCCGGCg- -3'
miRNA:   3'- -CGUgU---UGGGCuaC-CGGC--UGGGCCGgc -5'
18848 3' -60.6 NC_004683.1 + 24534 0.66 0.498293
Target:  5'- cCACAGCuCUGAUcucGGCgUGGCuuGGCCa -3'
miRNA:   3'- cGUGUUG-GGCUA---CCG-GCUGggCCGGc -5'
18848 3' -60.6 NC_004683.1 + 42579 0.66 0.498293
Target:  5'- aGCGC-GCCgCGGcggucggGGCCGGucgUCCGGCUGg -3'
miRNA:   3'- -CGUGuUGG-GCUa------CCGGCU---GGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 9392 0.66 0.497305
Target:  5'- aGCACcccauucGGCCCGGggaGGCCGccGCCCaaGCCa -3'
miRNA:   3'- -CGUG-------UUGGGCUa--CCGGC--UGGGc-CGGc -5'
18848 3' -60.6 NC_004683.1 + 48007 0.66 0.497305
Target:  5'- gGUACGACaaacugcugcagCCGAUGagguggcGCCGGCCCaGGCgGa -3'
miRNA:   3'- -CGUGUUG------------GGCUAC-------CGGCUGGG-CCGgC- -5'
18848 3' -60.6 NC_004683.1 + 12559 0.66 0.495332
Target:  5'- cGCGCGACgacuUCGGUGGCguaucgaccucgugCGGCUCGGCg- -3'
miRNA:   3'- -CGUGUUG----GGCUACCG--------------GCUGGGCCGgc -5'
18848 3' -60.6 NC_004683.1 + 13787 0.66 0.488457
Target:  5'- gGCuCAGCCCagucagccgGGCCagcagcaGCCCGGCCa -3'
miRNA:   3'- -CGuGUUGGGcua------CCGGc------UGGGCCGGc -5'
18848 3' -60.6 NC_004683.1 + 43184 0.66 0.488457
Target:  5'- uUACAagACgUCGAUGaCCGcgaACCCGGCCGa -3'
miRNA:   3'- cGUGU--UG-GGCUACcGGC---UGGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 21297 0.66 0.488457
Target:  5'- cGCAacGCCCGGUGuGuUCGGCUCGGaCCu -3'
miRNA:   3'- -CGUguUGGGCUAC-C-GGCUGGGCC-GGc -5'
18848 3' -60.6 NC_004683.1 + 12197 0.66 0.488457
Target:  5'- aCGCGGCCCGcc-GCCG-CCgGGUCGu -3'
miRNA:   3'- cGUGUUGGGCuacCGGCuGGgCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 10926 0.66 0.488457
Target:  5'- gGCACGuCCCacaucGUGGCgCGggaccGCUCGGCCGc -3'
miRNA:   3'- -CGUGUuGGGc----UACCG-GC-----UGGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 46521 0.66 0.488457
Target:  5'- -gAC-GCCCGAUcGGCaaccuucuugaCGGCCUGGUCGg -3'
miRNA:   3'- cgUGuUGGGCUA-CCG-----------GCUGGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 40174 0.66 0.487478
Target:  5'- cGUACAcGCCCGGcaucgacuggaccUGGCgGAUgaUCGGCCa -3'
miRNA:   3'- -CGUGU-UGGGCU-------------ACCGgCUG--GGCCGGc -5'
18848 3' -60.6 NC_004683.1 + 20407 0.66 0.478713
Target:  5'- gGCGC-ACCCGGggcGGCCaacggcGGCaCCGGCgGu -3'
miRNA:   3'- -CGUGuUGGGCUa--CCGG------CUG-GGCCGgC- -5'
18848 3' -60.6 NC_004683.1 + 43147 0.66 0.478713
Target:  5'- uGUGguACUCGAgguugaucggcUGGCCGggcugcugcugGCCCGGCUGa -3'
miRNA:   3'- -CGUguUGGGCU-----------ACCGGC-----------UGGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 51564 0.66 0.478713
Target:  5'- aGCGCAcgcagaacgaggGCCuCGAcgGGCuCGACCgucgccaGGCCGa -3'
miRNA:   3'- -CGUGU------------UGG-GCUa-CCG-GCUGGg------CCGGC- -5'
18848 3' -60.6 NC_004683.1 + 17377 0.66 0.469065
Target:  5'- cGCugAucuACCCGGUGcCCGAUCCGaucaCCGg -3'
miRNA:   3'- -CGugU---UGGGCUACcGGCUGGGCc---GGC- -5'
18848 3' -60.6 NC_004683.1 + 56487 0.66 0.469065
Target:  5'- cGCAgGuCCCGAc-GCauGCCCGGCCGc -3'
miRNA:   3'- -CGUgUuGGGCUacCGgcUGGGCCGGC- -5'
18848 3' -60.6 NC_004683.1 + 41271 0.66 0.468106
Target:  5'- cGCcCGugCUGAUcGCCGccgccauucugcuACCCGGCCu -3'
miRNA:   3'- -CGuGUugGGCUAcCGGC-------------UGGGCCGGc -5'
18848 3' -60.6 NC_004683.1 + 22411 0.66 0.459518
Target:  5'- cGCACAGuuCc--GGCuCGGCCUGGUCGg -3'
miRNA:   3'- -CGUGUUggGcuaCCG-GCUGGGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.