miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18848 5' -53.5 NC_004683.1 + 47474 0.66 0.835705
Target:  5'- uCCGGCGgcaucaacuguGGGuUCGGCAGCuccCACGCc -3'
miRNA:   3'- cGGCUGC-----------UCC-AGUUGUCGuucGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 31094 0.66 0.835705
Target:  5'- cCCGGCGAacUCGACGcCGAGC-CGCa -3'
miRNA:   3'- cGGCUGCUccAGUUGUcGUUCGuGCG- -5'
18848 5' -53.5 NC_004683.1 + 47102 0.66 0.835705
Target:  5'- uCUGAuCGGGG-UAGCGGCAccacAGCGCGa -3'
miRNA:   3'- cGGCU-GCUCCaGUUGUCGU----UCGUGCg -5'
18848 5' -53.5 NC_004683.1 + 39903 0.66 0.835705
Target:  5'- gGCCgGACGAcGGUCuACAGCuguucaaacgGGGCGaguUGCg -3'
miRNA:   3'- -CGG-CUGCU-CCAGuUGUCG----------UUCGU---GCG- -5'
18848 5' -53.5 NC_004683.1 + 32407 0.66 0.835705
Target:  5'- cGCCGAUGGGG-UAGCcGaCcGGCugGUg -3'
miRNA:   3'- -CGGCUGCUCCaGUUGuC-GuUCGugCG- -5'
18848 5' -53.5 NC_004683.1 + 56616 0.66 0.835705
Target:  5'- uGUCGAcuguCGAGGUCucCAGCc-GCAuCGCc -3'
miRNA:   3'- -CGGCU----GCUCCAGuuGUCGuuCGU-GCG- -5'
18848 5' -53.5 NC_004683.1 + 24396 0.66 0.835705
Target:  5'- uUCGACGAGGcCAccGCGGCGaucgucGGCuACGg -3'
miRNA:   3'- cGGCUGCUCCaGU--UGUCGU------UCG-UGCg -5'
18848 5' -53.5 NC_004683.1 + 1113 0.66 0.834811
Target:  5'- cGCCGAcucCGAGGUgCuGCA-CAAGCucgucaaGCGCg -3'
miRNA:   3'- -CGGCU---GCUCCA-GuUGUcGUUCG-------UGCG- -5'
18848 5' -53.5 NC_004683.1 + 23692 0.66 0.830306
Target:  5'- cGCCGACGGGuUCucgacguuccgccgcGGCGGCAccGGCG-GCg -3'
miRNA:   3'- -CGGCUGCUCcAG---------------UUGUCGU--UCGUgCG- -5'
18848 5' -53.5 NC_004683.1 + 49276 0.66 0.826664
Target:  5'- cCCGACGAcGUC-GCGGCA--CACGUg -3'
miRNA:   3'- cGGCUGCUcCAGuUGUCGUucGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 52002 0.66 0.826664
Target:  5'- gGCCGcccuGCGAGGaaccggccUCGACGcGCAuGCGcCGCu -3'
miRNA:   3'- -CGGC----UGCUCC--------AGUUGU-CGUuCGU-GCG- -5'
18848 5' -53.5 NC_004683.1 + 9425 0.66 0.826664
Target:  5'- uUCGGCGAccacGGUCGuGCAGCcAGGgauCACGCa -3'
miRNA:   3'- cGGCUGCU----CCAGU-UGUCG-UUC---GUGCG- -5'
18848 5' -53.5 NC_004683.1 + 13272 0.66 0.826664
Target:  5'- uGCgGuCGGGGUCcauACccuugGGCAcuGCACGCg -3'
miRNA:   3'- -CGgCuGCUCCAGu--UG-----UCGUu-CGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 7383 0.66 0.826664
Target:  5'- gGCCGACGAGGau-GCGGC---CACuGCu -3'
miRNA:   3'- -CGGCUGCUCCaguUGUCGuucGUG-CG- -5'
18848 5' -53.5 NC_004683.1 + 17880 0.66 0.826664
Target:  5'- uUCGGCGcgcucguauuGGUCAGCcGCGAG-ACGCa -3'
miRNA:   3'- cGGCUGCu---------CCAGUUGuCGUUCgUGCG- -5'
18848 5' -53.5 NC_004683.1 + 31479 0.66 0.826664
Target:  5'- cGCCGuagaaGAcGG-CGACGGCcAGCGcCGCg -3'
miRNA:   3'- -CGGCug---CU-CCaGUUGUCGuUCGU-GCG- -5'
18848 5' -53.5 NC_004683.1 + 46845 0.66 0.826664
Target:  5'- uGCCGGCGuacuugcuGG-C-GCGGUAGGC-CGCg -3'
miRNA:   3'- -CGGCUGCu-------CCaGuUGUCGUUCGuGCG- -5'
18848 5' -53.5 NC_004683.1 + 7487 0.66 0.825748
Target:  5'- -gUGACGA--UCAugugcaaGCGGCAGGCugGCu -3'
miRNA:   3'- cgGCUGCUccAGU-------UGUCGUUCGugCG- -5'
18848 5' -53.5 NC_004683.1 + 54076 0.66 0.817415
Target:  5'- cGCCgguGugGAGcGUCAcCGGCGAGUcgaggugcaAUGCg -3'
miRNA:   3'- -CGG---CugCUC-CAGUuGUCGUUCG---------UGCG- -5'
18848 5' -53.5 NC_004683.1 + 18295 0.66 0.817415
Target:  5'- cGUCGACGcGGc---CAGCGAGCGCa- -3'
miRNA:   3'- -CGGCUGCuCCaguuGUCGUUCGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.