miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18848 5' -53.5 NC_004683.1 + 3061 1.13 0.000887
Target:  5'- gGCCGACGAGGUCAACAGCAAGCACGCc -3'
miRNA:   3'- -CGGCUGCUCCAGUUGUCGUUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 5096 0.85 0.073648
Target:  5'- cGCCGAaGAGGUCAAgGGCGAGCuGCGUg -3'
miRNA:   3'- -CGGCUgCUCCAGUUgUCGUUCG-UGCG- -5'
18848 5' -53.5 NC_004683.1 + 55260 0.82 0.113236
Target:  5'- aGCCGAgcuucuUGAGGUCAgGCAGC-AGCGCGCc -3'
miRNA:   3'- -CGGCU------GCUCCAGU-UGUCGuUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 23576 0.81 0.149899
Target:  5'- cGUCGGCGuGGUCGACGGgAAGCGCa- -3'
miRNA:   3'- -CGGCUGCuCCAGUUGUCgUUCGUGcg -5'
18848 5' -53.5 NC_004683.1 + 32304 0.8 0.162851
Target:  5'- -aCGuCGGGGUUGgugcGCAGCAGGCGCGCg -3'
miRNA:   3'- cgGCuGCUCCAGU----UGUCGUUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 50204 0.8 0.167388
Target:  5'- aCCGACaccaaguuGAGcGUCGGCAGCGacAGCACGCg -3'
miRNA:   3'- cGGCUG--------CUC-CAGUUGUCGU--UCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 20376 0.8 0.176801
Target:  5'- gGCCGGCGAGGgaucugCAcugGCAGCuGGCgGCGCa -3'
miRNA:   3'- -CGGCUGCUCCa-----GU---UGUCGuUCG-UGCG- -5'
18848 5' -53.5 NC_004683.1 + 54151 0.8 0.176801
Target:  5'- cGCCGAgCGgccaaAGGUCAACGGCc-GCGCGCu -3'
miRNA:   3'- -CGGCU-GC-----UCCAGUUGUCGuuCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 46597 0.79 0.197048
Target:  5'- uGCCGGuCGAGGgccgCGACGGCAAGgccgcCGCGCc -3'
miRNA:   3'- -CGGCU-GCUCCa---GUUGUCGUUC-----GUGCG- -5'
18848 5' -53.5 NC_004683.1 + 35921 0.79 0.201874
Target:  5'- uGCUGGCGGGcUCAACAGCAGGUgguguggggaaccACGCu -3'
miRNA:   3'- -CGGCUGCUCcAGUUGUCGUUCG-------------UGCG- -5'
18848 5' -53.5 NC_004683.1 + 11756 0.77 0.250067
Target:  5'- cGCUGACGA--UCu-CGGCGAGCGCGCg -3'
miRNA:   3'- -CGGCUGCUccAGuuGUCGUUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 16026 0.77 0.250067
Target:  5'- gGCCGACG-GG-CAACGGC-GGCGCGg -3'
miRNA:   3'- -CGGCUGCuCCaGUUGUCGuUCGUGCg -5'
18848 5' -53.5 NC_004683.1 + 3293 0.77 0.263344
Target:  5'- cGCCGACGccuGGcCGACGGCAcAGCACa- -3'
miRNA:   3'- -CGGCUGCu--CCaGUUGUCGU-UCGUGcg -5'
18848 5' -53.5 NC_004683.1 + 24117 0.76 0.277188
Target:  5'- gGUCGACGAcGG-CAgccGCGGCAAGUACGUc -3'
miRNA:   3'- -CGGCUGCU-CCaGU---UGUCGUUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 12379 0.76 0.277188
Target:  5'- cGUCGAacgUGAGGUCGGCGGC--GCGCGUg -3'
miRNA:   3'- -CGGCU---GCUCCAGUUGUCGuuCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 26205 0.76 0.299032
Target:  5'- aGCCGACGGugcgccggugcGGUCGACAGC-GGC-CGUc -3'
miRNA:   3'- -CGGCUGCU-----------CCAGUUGUCGuUCGuGCG- -5'
18848 5' -53.5 NC_004683.1 + 26076 0.75 0.314322
Target:  5'- uGUCGACcgagcAGGccCAACAGCAGGUGCGCg -3'
miRNA:   3'- -CGGCUGc----UCCa-GUUGUCGUUCGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 44398 0.75 0.31745
Target:  5'- aGCCGcACGAGGUCGAUAcGCcaccgaagucgucGCGCGCa -3'
miRNA:   3'- -CGGC-UGCUCCAGUUGU-CGuu-----------CGUGCG- -5'
18848 5' -53.5 NC_004683.1 + 4755 0.75 0.321393
Target:  5'- gGCCGACGAGGUCcacgcccggauggAGCAGaucgcCGAGCugGa -3'
miRNA:   3'- -CGGCUGCUCCAG-------------UUGUC-----GUUCGugCg -5'
18848 5' -53.5 NC_004683.1 + 13145 0.75 0.322186
Target:  5'- aGCgCGGcCGAGGUCAGCAGC--GCACcgGCa -3'
miRNA:   3'- -CG-GCU-GCUCCAGUUGUCGuuCGUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.