miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18849 3' -57.6 NC_004683.1 + 5232 0.66 0.636057
Target:  5'- gGCGaGGGcGGCGcGGcacuGGuCGCGGCCg -3'
miRNA:   3'- aCGCaCUC-CUGCuCUu---CCuGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 32264 0.66 0.636057
Target:  5'- gGCGuUGcGGuCGcGgcGGcGCGCGGCCa -3'
miRNA:   3'- aCGC-ACuCCuGCuCuuCC-UGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 41893 0.66 0.62532
Target:  5'- aUGC-UGGGGugGccuGGGugAGGACGCcuugccGGCCu -3'
miRNA:   3'- -ACGcACUCCugC---UCU--UCCUGCG------CCGG- -5'
18849 3' -57.6 NC_004683.1 + 44015 0.66 0.603871
Target:  5'- uUGUGUGucGACaGAGAccggccaccGGuGGgGCGGCCg -3'
miRNA:   3'- -ACGCACucCUG-CUCU---------UC-CUgCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 44266 0.66 0.603871
Target:  5'- cGCGccGAGGAUGccGAGGAUGcCGuGCCc -3'
miRNA:   3'- aCGCa-CUCCUGCucUUCCUGC-GC-CGG- -5'
18849 3' -57.6 NC_004683.1 + 45533 0.66 0.603871
Target:  5'- gUGCgGUGAGGGCGGucuuGGugGUGuCCg -3'
miRNA:   3'- -ACG-CACUCCUGCUcuu-CCugCGCcGG- -5'
18849 3' -57.6 NC_004683.1 + 26381 0.66 0.603871
Target:  5'- ----cGAGGGCGcgccucaccuGAAGGAUGUGGUCg -3'
miRNA:   3'- acgcaCUCCUGCu---------CUUCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 827 0.66 0.596382
Target:  5'- aGCGUGGGagcggaagucguuGAUGGGcagggcaucgucuucGAGGACGaUGGCCc -3'
miRNA:   3'- aCGCACUC-------------CUGCUC---------------UUCCUGC-GCCGG- -5'
18849 3' -57.6 NC_004683.1 + 2723 0.66 0.593177
Target:  5'- cGaCGUGGuGGuCGAGGAacGGAUggugcgcgGCGGCCg -3'
miRNA:   3'- aC-GCACU-CCuGCUCUU--CCUG--------CGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 1910 0.66 0.593177
Target:  5'- aUGCGUGGGcGugG-GAucgcaAGGACGCcaaggacGCCa -3'
miRNA:   3'- -ACGCACUC-CugCuCU-----UCCUGCGc------CGG- -5'
18849 3' -57.6 NC_004683.1 + 772 0.66 0.589975
Target:  5'- gGCGgccGAGGuagaagcugacgauGCGGGu-GGGCGCGGUg -3'
miRNA:   3'- aCGCa--CUCC--------------UGCUCuuCCUGCGCCGg -5'
18849 3' -57.6 NC_004683.1 + 5979 0.67 0.586775
Target:  5'- gUGgGUGAGG-CGAGGcgauGGACGCcaacuggaacaccucGGCg -3'
miRNA:   3'- -ACgCACUCCuGCUCUu---CCUGCG---------------CCGg -5'
18849 3' -57.6 NC_004683.1 + 11473 0.67 0.582514
Target:  5'- aGCGUGGcGACGAGccGGucgguGCGgGGCg -3'
miRNA:   3'- aCGCACUcCUGCUCuuCC-----UGCgCCGg -5'
18849 3' -57.6 NC_004683.1 + 21562 0.67 0.561314
Target:  5'- cUGC-UGGGcGGCGGcgguGgcGGGCGCGGCa -3'
miRNA:   3'- -ACGcACUC-CUGCU----CuuCCUGCGCCGg -5'
18849 3' -57.6 NC_004683.1 + 10515 0.67 0.544507
Target:  5'- cGCGccGAGGAgGAGAAGcucaagaggcugcguGACGaaggGGCCa -3'
miRNA:   3'- aCGCa-CUCCUgCUCUUC---------------CUGCg---CCGG- -5'
18849 3' -57.6 NC_004683.1 + 10814 0.67 0.54033
Target:  5'- aGCGgGAGGGCcaaucGGAuuGGCGCuGGCCg -3'
miRNA:   3'- aCGCaCUCCUGc----UCUucCUGCG-CCGG- -5'
18849 3' -57.6 NC_004683.1 + 7364 0.68 0.509378
Target:  5'- cGCGacaccuUGAguucguGGcCGAcGAGGAUGCGGCCa -3'
miRNA:   3'- aCGC------ACU------CCuGCUcUUCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 18366 0.68 0.499225
Target:  5'- cGCGacggucuaccUGAuGGcCGAGAAGGucggcggUGCGGCCa -3'
miRNA:   3'- aCGC----------ACU-CCuGCUCUUCCu------GCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 40101 0.68 0.489162
Target:  5'- cGCGccuUGAcaGACcAGccGGACGCGGCCg -3'
miRNA:   3'- aCGC---ACUc-CUGcUCuuCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 26973 0.68 0.479195
Target:  5'- cGCGUGAGcGcCGGGcAGG-C-CGGCCa -3'
miRNA:   3'- aCGCACUC-CuGCUCuUCCuGcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.