miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18849 3' -57.6 NC_004683.1 + 3419 1.12 0.000417
Target:  5'- cUGCGUGAGGACGAGAAGGACGCGGCCg -3'
miRNA:   3'- -ACGCACUCCUGCUCUUCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 2723 0.66 0.593177
Target:  5'- cGaCGUGGuGGuCGAGGAacGGAUggugcgcgGCGGCCg -3'
miRNA:   3'- aC-GCACU-CCuGCUCUU--CCUG--------CGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 1910 0.66 0.593177
Target:  5'- aUGCGUGGGcGugG-GAucgcaAGGACGCcaaggacGCCa -3'
miRNA:   3'- -ACGCACUC-CugCuCU-----UCCUGCGc------CGG- -5'
18849 3' -57.6 NC_004683.1 + 5979 0.67 0.586775
Target:  5'- gUGgGUGAGG-CGAGGcgauGGACGCcaacuggaacaccucGGCg -3'
miRNA:   3'- -ACgCACUCCuGCUCUu---CCUGCG---------------CCGg -5'
18849 3' -57.6 NC_004683.1 + 21562 0.67 0.561314
Target:  5'- cUGC-UGGGcGGCGGcgguGgcGGGCGCGGCa -3'
miRNA:   3'- -ACGcACUC-CUGCU----CuuCCUGCGCCGg -5'
18849 3' -57.6 NC_004683.1 + 10515 0.67 0.544507
Target:  5'- cGCGccGAGGAgGAGAAGcucaagaggcugcguGACGaaggGGCCa -3'
miRNA:   3'- aCGCa-CUCCUgCUCUUC---------------CUGCg---CCGG- -5'
18849 3' -57.6 NC_004683.1 + 10814 0.67 0.54033
Target:  5'- aGCGgGAGGGCcaaucGGAuuGGCGCuGGCCg -3'
miRNA:   3'- aCGCaCUCCUGc----UCUucCUGCG-CCGG- -5'
18849 3' -57.6 NC_004683.1 + 18366 0.68 0.499225
Target:  5'- cGCGacggucuaccUGAuGGcCGAGAAGGucggcggUGCGGCCa -3'
miRNA:   3'- aCGC----------ACU-CCuGCUCUUCCu------GCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 40101 0.68 0.489162
Target:  5'- cGCGccuUGAcaGACcAGccGGACGCGGCCg -3'
miRNA:   3'- aCGC---ACUc-CUGcUCuuCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 26973 0.68 0.479195
Target:  5'- cGCGUGAGcGcCGGGcAGG-C-CGGCCa -3'
miRNA:   3'- aCGCACUC-CuGCUCuUCCuGcGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 19409 0.69 0.430952
Target:  5'- gGC-UGGGGaACGuccGAA-GACGCGGCCa -3'
miRNA:   3'- aCGcACUCC-UGCu--CUUcCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 8161 0.76 0.156644
Target:  5'- gGCGccGAGGcCGcGAAGGcCGCGGCCa -3'
miRNA:   3'- aCGCa-CUCCuGCuCUUCCuGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 20485 0.73 0.244082
Target:  5'- gGCG-GAGGugGGGccGGugGUggaGGCCg -3'
miRNA:   3'- aCGCaCUCCugCUCuuCCugCG---CCGG- -5'
18849 3' -57.6 NC_004683.1 + 21611 0.71 0.35179
Target:  5'- gGgGUGAGGGCGGcuGGGGCGgcaacugGGCCg -3'
miRNA:   3'- aCgCACUCCUGCUcuUCCUGCg------CCGG- -5'
18849 3' -57.6 NC_004683.1 + 52963 0.71 0.355082
Target:  5'- gUGCGUGAGGugGccagaaagaagcgcAGGcgcaacggaugacgAGGGCGCGuGUCa -3'
miRNA:   3'- -ACGCACUCCugC--------------UCU--------------UCCUGCGC-CGG- -5'
18849 3' -57.6 NC_004683.1 + 39137 0.7 0.38918
Target:  5'- aUGCucGAGGcccgcauCGAGAAGGACGCaccgcucgucgccaaGGCCg -3'
miRNA:   3'- -ACGcaCUCCu------GCUCUUCCUGCG---------------CCGG- -5'
18849 3' -57.6 NC_004683.1 + 2115 0.7 0.394477
Target:  5'- aGuCGUGGccaucgcccuGGugGuGgcGGGCGUGGCCg -3'
miRNA:   3'- aC-GCACU----------CCugCuCuuCCUGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 19649 0.69 0.421648
Target:  5'- cGCGccGAGGACGGGuucaacGACGCcGCCg -3'
miRNA:   3'- aCGCa-CUCCUGCUCuuc---CUGCGcCGG- -5'
18849 3' -57.6 NC_004683.1 + 5232 0.66 0.636057
Target:  5'- gGCGaGGGcGGCGcGGcacuGGuCGCGGCCg -3'
miRNA:   3'- aCGCaCUC-CUGCuCUu---CCuGCGCCGG- -5'
18849 3' -57.6 NC_004683.1 + 7970 0.72 0.312483
Target:  5'- gGCuUGAGGGCG-GcGGGAuCGCGGCg -3'
miRNA:   3'- aCGcACUCCUGCuCuUCCU-GCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.