miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18849 5' -55.8 NC_004683.1 + 48592 0.66 0.694537
Target:  5'- -cGGcCCGCGCgGGGcCGAUCAcCGu -3'
miRNA:   3'- uuCCaGGCGCGgCUCuGCUAGUuGUg -5'
18849 5' -55.8 NC_004683.1 + 25004 0.66 0.694537
Target:  5'- -uGGuucaUCCGCGCCGAGAcCGAgcugccguucgUCAucuacucgGCGCa -3'
miRNA:   3'- uuCC----AGGCGCGGCUCU-GCU-----------AGU--------UGUG- -5'
18849 5' -55.8 NC_004683.1 + 26211 0.66 0.672709
Target:  5'- -cGGU--GCGCCGGuGCGGUCGACAg -3'
miRNA:   3'- uuCCAggCGCGGCUcUGCUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 43717 0.66 0.672709
Target:  5'- -cGGUCgacggCGaCGCCGAuGCGGUCGACGg -3'
miRNA:   3'- uuCCAG-----GC-GCGGCUcUGCUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 56959 0.66 0.672709
Target:  5'- uGGGUCgGCGUCGugaccagcGACGAUCuAGCGa -3'
miRNA:   3'- uUCCAGgCGCGGCu-------CUGCUAG-UUGUg -5'
18849 5' -55.8 NC_004683.1 + 56291 0.66 0.672709
Target:  5'- uGAGGUucugCCGCGCCGcGAUGAccacgaacUCgAACGCc -3'
miRNA:   3'- -UUCCA----GGCGCGGCuCUGCU--------AG-UUGUG- -5'
18849 5' -55.8 NC_004683.1 + 16343 0.66 0.661732
Target:  5'- --aGUgCGCgGuuGAGGCGAUCGACGa -3'
miRNA:   3'- uucCAgGCG-CggCUCUGCUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 43494 0.66 0.661732
Target:  5'- uGGGGgcugCCGCGaCCGcAGACcGUCGGCGa -3'
miRNA:   3'- -UUCCa---GGCGC-GGC-UCUGcUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 9822 0.66 0.661732
Target:  5'- gGAGGaUCgGCGCCGAGcCGAcUCGAa-- -3'
miRNA:   3'- -UUCC-AGgCGCGGCUCuGCU-AGUUgug -5'
18849 5' -55.8 NC_004683.1 + 1671 0.67 0.639705
Target:  5'- -cGGUUgGgGCCucGACGAUCGcaGCGCg -3'
miRNA:   3'- uuCCAGgCgCGGcuCUGCUAGU--UGUG- -5'
18849 5' -55.8 NC_004683.1 + 44287 0.67 0.628676
Target:  5'- -cGGcgaUCCGCGCCGA--CGAUCGcccggGCACc -3'
miRNA:   3'- uuCC---AGGCGCGGCUcuGCUAGU-----UGUG- -5'
18849 5' -55.8 NC_004683.1 + 15148 0.67 0.628676
Target:  5'- aGGGGUUCGUGCgGAuccgcaacaucGGCGAUCAGgAUa -3'
miRNA:   3'- -UUCCAGGCGCGgCU-----------CUGCUAGUUgUG- -5'
18849 5' -55.8 NC_004683.1 + 6482 0.67 0.628676
Target:  5'- cGAGGacgCCaGCGCCGAGcCgGGUCAccuGCGCu -3'
miRNA:   3'- -UUCCa--GG-CGCGGCUCuG-CUAGU---UGUG- -5'
18849 5' -55.8 NC_004683.1 + 10598 0.67 0.61765
Target:  5'- gAAGGcgcgCCGCGCUGAGgugcggGCGGUCcGCGa -3'
miRNA:   3'- -UUCCa---GGCGCGGCUC------UGCUAGuUGUg -5'
18849 5' -55.8 NC_004683.1 + 13862 0.67 0.61765
Target:  5'- cGAGGaCCGCGCCGGcgcuGAC-AUC-ACGCg -3'
miRNA:   3'- -UUCCaGGCGCGGCU----CUGcUAGuUGUG- -5'
18849 5' -55.8 NC_004683.1 + 15683 0.67 0.61765
Target:  5'- uGAGG-CCGgGUagcagaauggCGGcGGCGAUCAGCACg -3'
miRNA:   3'- -UUCCaGGCgCG----------GCU-CUGCUAGUUGUG- -5'
18849 5' -55.8 NC_004683.1 + 8990 0.67 0.61765
Target:  5'- -cGGU-CGaCGCCGAGAagauCGGUCGGCAg -3'
miRNA:   3'- uuCCAgGC-GCGGCUCU----GCUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 38687 0.67 0.606637
Target:  5'- -uGG-CCGCGUCGAcgUGAUCGACAa -3'
miRNA:   3'- uuCCaGGCGCGGCUcuGCUAGUUGUg -5'
18849 5' -55.8 NC_004683.1 + 33237 0.67 0.606637
Target:  5'- cGGGGUCgGCGCCGGGGUGGUgcCGcCGCc -3'
miRNA:   3'- -UUCCAGgCGCGGCUCUGCUA--GUuGUG- -5'
18849 5' -55.8 NC_004683.1 + 10675 0.67 0.595645
Target:  5'- cGGG-CCGCGUC-AGcCGGUCAACAUc -3'
miRNA:   3'- uUCCaGGCGCGGcUCuGCUAGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.