miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18850 3' -52.9 NC_004683.1 + 55376 0.66 0.852417
Target:  5'- aUGcCCGGCaauGUggCGACg-UUGCCGCCg -3'
miRNA:   3'- gACuGGUCG---CAa-GUUGagAACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 52337 0.66 0.852417
Target:  5'- -cGAuuCCGGCGUUCGGCgguaCUcGCCcuggGCCg -3'
miRNA:   3'- gaCU--GGUCGCAAGUUGa---GAaCGG----CGG- -5'
18850 3' -52.9 NC_004683.1 + 5524 0.66 0.852417
Target:  5'- -aGAUCGGacuCGUUgAGCUUgUGCCGCUc -3'
miRNA:   3'- gaCUGGUC---GCAAgUUGAGaACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 5103 0.66 0.841949
Target:  5'- -gGAUCGcGCGguggugCAGCUCgagcgcggucgGCCGCCg -3'
miRNA:   3'- gaCUGGU-CGCaa----GUUGAGaa---------CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 30770 0.66 0.834787
Target:  5'- -cGcACCGGCGcaccgUCGGCUgCgcacGCCGCCc -3'
miRNA:   3'- gaC-UGGUCGCa----AGUUGA-Gaa--CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 6955 0.66 0.816278
Target:  5'- -cGGCgGGCGguggugCAGCUCgucgGCCGgCg -3'
miRNA:   3'- gaCUGgUCGCaa----GUUGAGaa--CGGCgG- -5'
18850 3' -52.9 NC_004683.1 + 8145 0.66 0.816278
Target:  5'- -cGGCCAGCGcgu--UUCUUGCCGaCg -3'
miRNA:   3'- gaCUGGUCGCaaguuGAGAACGGCgG- -5'
18850 3' -52.9 NC_004683.1 + 17873 0.67 0.805752
Target:  5'- -gGGCCGgggacgccgcagcGCGUUCAGCUCaa--CGCCa -3'
miRNA:   3'- gaCUGGU-------------CGCAAGUUGAGaacgGCGG- -5'
18850 3' -52.9 NC_004683.1 + 23728 0.67 0.79697
Target:  5'- aCUGGCUAGcCGggaAACgg--GCCGCCa -3'
miRNA:   3'- -GACUGGUC-GCaagUUGagaaCGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 49699 0.67 0.79697
Target:  5'- gUGGCCA-CGUUCG--UCUgGCCGUCg -3'
miRNA:   3'- gACUGGUcGCAAGUugAGAaCGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 5159 0.67 0.79697
Target:  5'- --cGCCAGCGa-CAACgugCgcGCCGCCg -3'
miRNA:   3'- gacUGGUCGCaaGUUGa--GaaCGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 42899 0.67 0.794999
Target:  5'- uUGACCAucacgcacuggguGCGgUgAACUugucgggaaucgcCUUGCCGCCg -3'
miRNA:   3'- gACUGGU-------------CGCaAgUUGA-------------GAACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 51460 0.67 0.787044
Target:  5'- -cGAacUCGGCGUccCAGCUCcacugcacgGCCGCCg -3'
miRNA:   3'- gaCU--GGUCGCAa-GUUGAGaa-------CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 33043 0.67 0.787044
Target:  5'- gUGACCGGCc--CGACga-UGCCGUCg -3'
miRNA:   3'- gACUGGUCGcaaGUUGagaACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 38478 0.67 0.776952
Target:  5'- uUGugCAGCGacuccaggUUCGGCgUC-UGCCGCa -3'
miRNA:   3'- gACugGUCGC--------AAGUUG-AGaACGGCGg -5'
18850 3' -52.9 NC_004683.1 + 11519 0.67 0.776952
Target:  5'- -cGAgCAGCGUUCGGCgccgUGCUggauGCCc -3'
miRNA:   3'- gaCUgGUCGCAAGUUGaga-ACGG----CGG- -5'
18850 3' -52.9 NC_004683.1 + 41374 0.67 0.766705
Target:  5'- -cGGCCA-CGaucUUCGAgUCUgcguUGCCGCCg -3'
miRNA:   3'- gaCUGGUcGC---AAGUUgAGA----ACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 56177 0.67 0.762565
Target:  5'- gCUGGCCAccGCGcccacccgcaucgUCAGCuUCUaccucgGCCGCCa -3'
miRNA:   3'- -GACUGGU--CGCa------------AGUUG-AGAa-----CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 43129 0.68 0.756315
Target:  5'- -aGACCGGCGUgCGGCUgCgugGCCGg- -3'
miRNA:   3'- gaCUGGUCGCAaGUUGA-Gaa-CGGCgg -5'
18850 3' -52.9 NC_004683.1 + 49021 0.68 0.756315
Target:  5'- -aGAUCAGCcaucgUCAcucaaGCUCUucgagaUGCCGCCc -3'
miRNA:   3'- gaCUGGUCGca---AGU-----UGAGA------ACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.