miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18850 3' -52.9 NC_004683.1 + 3562 1.12 0.001186
Target:  5'- cCUGACCAGCGUUCAACUCUUGCCGCCc -3'
miRNA:   3'- -GACUGGUCGCAAGUUGAGAACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 15443 0.75 0.342029
Target:  5'- -cGaAUCGGUGUUCGGCaUCgUGCCGCCg -3'
miRNA:   3'- gaC-UGGUCGCAAGUUG-AGaACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 2399 0.72 0.493768
Target:  5'- aCUGGCCGGCccgUCGACggaaUUGgCGCCu -3'
miRNA:   3'- -GACUGGUCGca-AGUUGag--AACgGCGG- -5'
18850 3' -52.9 NC_004683.1 + 10357 0.72 0.504293
Target:  5'- -cGACgGGCGcggCGGC-CUUGCCGUCg -3'
miRNA:   3'- gaCUGgUCGCaa-GUUGaGAACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 28898 0.72 0.514913
Target:  5'- -cGACCAGCG-UCcGCagg-GCCGCCa -3'
miRNA:   3'- gaCUGGUCGCaAGuUGagaaCGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 36196 0.71 0.544017
Target:  5'- gUGACCAGCGgagacggCAGgUCUccgcggaacucacuUGCCGCa -3'
miRNA:   3'- gACUGGUCGCaa-----GUUgAGA--------------ACGGCGg -5'
18850 3' -52.9 NC_004683.1 + 26331 0.71 0.547285
Target:  5'- -cGACCGGCGcugUCGGCggugCgagGCCGCg -3'
miRNA:   3'- gaCUGGUCGCa--AGUUGa---Gaa-CGGCGg -5'
18850 3' -52.9 NC_004683.1 + 34134 0.71 0.569221
Target:  5'- aUGGCCGuacCGUUCGAUaCggUGCCGCCu -3'
miRNA:   3'- gACUGGUc--GCAAGUUGaGa-ACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 39318 0.71 0.580273
Target:  5'- --cACCAGCGUcUCAaccacccaauACUCUUGgCCGUCa -3'
miRNA:   3'- gacUGGUCGCA-AGU----------UGAGAAC-GGCGG- -5'
18850 3' -52.9 NC_004683.1 + 10149 0.7 0.591369
Target:  5'- gUGGCCAGCGgaugaUCAACcgggcggugCUUggacccGCCGCCg -3'
miRNA:   3'- gACUGGUCGCa----AGUUGa--------GAA------CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 35013 0.7 0.602501
Target:  5'- cCUGGCCGGUG---AACUCggcgGCCGCa -3'
miRNA:   3'- -GACUGGUCGCaagUUGAGaa--CGGCGg -5'
18850 3' -52.9 NC_004683.1 + 31213 0.7 0.602501
Target:  5'- -cGGCCAGCGUgcUCGACggcaGCgGCCc -3'
miRNA:   3'- gaCUGGUCGCA--AGUUGagaaCGgCGG- -5'
18850 3' -52.9 NC_004683.1 + 55008 0.7 0.634896
Target:  5'- -cGGCCAGCGUcacggccaUCAguugcacgaugucGCUCUUGgCGUCc -3'
miRNA:   3'- gaCUGGUCGCA--------AGU-------------UGAGAACgGCGG- -5'
18850 3' -52.9 NC_004683.1 + 44572 0.69 0.669492
Target:  5'- -cGGCCGGCG-UCAAagccacgCgcGCCGCCg -3'
miRNA:   3'- gaCUGGUCGCaAGUUga-----GaaCGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 35661 0.69 0.669492
Target:  5'- aUGACUccaAGCGcggCGACUa-UGCCGCCc -3'
miRNA:   3'- gACUGG---UCGCaa-GUUGAgaACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 42735 0.69 0.680593
Target:  5'- gCUGucgguauCCGGCGcgaagCuGCUgUUGCCGCCg -3'
miRNA:   3'- -GACu------GGUCGCaa---GuUGAgAACGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 8482 0.69 0.691648
Target:  5'- gCUGACCGGCa--CGACUCccGCgGCUg -3'
miRNA:   3'- -GACUGGUCGcaaGUUGAGaaCGgCGG- -5'
18850 3' -52.9 NC_004683.1 + 32145 0.68 0.702643
Target:  5'- uUGAgCCGGuCGcggaUCAGCUCgaacucGCCGCCg -3'
miRNA:   3'- gACU-GGUC-GCa---AGUUGAGaa----CGGCGG- -5'
18850 3' -52.9 NC_004683.1 + 55264 0.68 0.702643
Target:  5'- -cGACCGGCGUgugguGCUCaccUGCCuGCUg -3'
miRNA:   3'- gaCUGGUCGCAagu--UGAGa--ACGG-CGG- -5'
18850 3' -52.9 NC_004683.1 + 31081 0.68 0.712478
Target:  5'- -cGGCCAGCGUcugcccggcgaacUCGACgcCgaGCCGCa -3'
miRNA:   3'- gaCUGGUCGCA-------------AGUUGa-GaaCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.