miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18850 5' -56 NC_004683.1 + 25752 0.66 0.732807
Target:  5'- aUCGGgccgcugcCGUCGAGC---ACGCUGGCCGa -3'
miRNA:   3'- -AGCC--------GCAGCUCGcuaUGUGGCUGGUc -5'
18850 5' -56 NC_004683.1 + 14519 0.66 0.732807
Target:  5'- aCGGCGaccUGGGCGAga-ACUGGCCGc -3'
miRNA:   3'- aGCCGCa--GCUCGCUaugUGGCUGGUc -5'
18850 5' -56 NC_004683.1 + 50215 0.66 0.732807
Target:  5'- gUUGaGCGUCGgcAGCGAcaGCACgCGGCCGc -3'
miRNA:   3'- -AGC-CGCAGC--UCGCUa-UGUG-GCUGGUc -5'
18850 5' -56 NC_004683.1 + 45256 0.66 0.731769
Target:  5'- -aGGa-UCGGGCGGUGCuggugucAUCGGCCAGc -3'
miRNA:   3'- agCCgcAGCUCGCUAUG-------UGGCUGGUC- -5'
18850 5' -56 NC_004683.1 + 30496 0.66 0.729691
Target:  5'- gUCGGCGUaucgggcucggCGGGCGGccuggaucgcggugUGCACugCGGCCAa -3'
miRNA:   3'- -AGCCGCA-----------GCUCGCU--------------AUGUG--GCUGGUc -5'
18850 5' -56 NC_004683.1 + 43391 0.66 0.722388
Target:  5'- gCGGCGcCGcaaccgccaGGCGAuccggcucUACGCCGACUg- -3'
miRNA:   3'- aGCCGCaGC---------UCGCU--------AUGUGGCUGGuc -5'
18850 5' -56 NC_004683.1 + 3373 0.66 0.722388
Target:  5'- cUCGGCGgCGAagacgcggccgGCGGUGCgGCCGGCg-- -3'
miRNA:   3'- -AGCCGCaGCU-----------CGCUAUG-UGGCUGguc -5'
18850 5' -56 NC_004683.1 + 53040 0.66 0.722388
Target:  5'- aCGGgGUCGAccucuucaGCGAUGCugCGcagGCUGGc -3'
miRNA:   3'- aGCCgCAGCU--------CGCUAUGugGC---UGGUC- -5'
18850 5' -56 NC_004683.1 + 8026 0.66 0.721341
Target:  5'- cCGGUgaugcgcaccgcgGUCGAGCGcgACAUCGauGCCGa -3'
miRNA:   3'- aGCCG-------------CAGCUCGCuaUGUGGC--UGGUc -5'
18850 5' -56 NC_004683.1 + 47598 0.66 0.719244
Target:  5'- gCGGCGuUCGGGcCGAUGCugCaacacaaucccgacGGCCGa -3'
miRNA:   3'- aGCCGC-AGCUC-GCUAUGugG--------------CUGGUc -5'
18850 5' -56 NC_004683.1 + 44276 0.66 0.711882
Target:  5'- gCGGC-UCGAcgcgGCGAUccGCGCCGACg-- -3'
miRNA:   3'- aGCCGcAGCU----CGCUA--UGUGGCUGguc -5'
18850 5' -56 NC_004683.1 + 11766 0.66 0.711882
Target:  5'- cUCGGCGagCGcGCGGUcgaaucggugaACGCCGAacgaCCGGg -3'
miRNA:   3'- -AGCCGCa-GCuCGCUA-----------UGUGGCU----GGUC- -5'
18850 5' -56 NC_004683.1 + 12674 0.66 0.711882
Target:  5'- gUCGGUGccCGGGCGAUcgucgGCGCgGAUCGc -3'
miRNA:   3'- -AGCCGCa-GCUCGCUA-----UGUGgCUGGUc -5'
18850 5' -56 NC_004683.1 + 8445 0.66 0.711882
Target:  5'- aCGGUGcCG-GCGAggACACUGGCgCGGc -3'
miRNA:   3'- aGCCGCaGCuCGCUa-UGUGGCUG-GUC- -5'
18850 5' -56 NC_004683.1 + 9223 0.66 0.7013
Target:  5'- aUCGGCGguccCGccuGgGAcGCGCUGGCCGGc -3'
miRNA:   3'- -AGCCGCa---GCu--CgCUaUGUGGCUGGUC- -5'
18850 5' -56 NC_004683.1 + 12253 0.66 0.7013
Target:  5'- cUCGGCGU--AGUGGUACGUCGGCgGGc -3'
miRNA:   3'- -AGCCGCAgcUCGCUAUGUGGCUGgUC- -5'
18850 5' -56 NC_004683.1 + 16588 0.66 0.7013
Target:  5'- aUGGCGUCGAuguGCGGgucgACcuguGgCGGCCGGg -3'
miRNA:   3'- aGCCGCAGCU---CGCUa---UG----UgGCUGGUC- -5'
18850 5' -56 NC_004683.1 + 26697 0.66 0.698112
Target:  5'- cCGGUgucacGUCGAGUGcgccggcggcaucgcGCACCGACCAc -3'
miRNA:   3'- aGCCG-----CAGCUCGCua-------------UGUGGCUGGUc -5'
18850 5' -56 NC_004683.1 + 2079 0.66 0.690653
Target:  5'- aCGuCGUUGAGcCGAUGC-CCGuugGCCAGa -3'
miRNA:   3'- aGCcGCAGCUC-GCUAUGuGGC---UGGUC- -5'
18850 5' -56 NC_004683.1 + 8365 0.66 0.690653
Target:  5'- -gGGCccaGUCGGG--GUGCAUCGGCCGGg -3'
miRNA:   3'- agCCG---CAGCUCgcUAUGUGGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.