miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18852 3' -56.6 NC_004683.1 + 619 0.66 0.641943
Target:  5'- uGCUGUCguGGGUgaGCAGcccgUCGAgCACGg -3'
miRNA:   3'- -CGGCGGguUCCA--CGUCa---AGCUgGUGC- -5'
18852 3' -56.6 NC_004683.1 + 3387 0.66 0.631101
Target:  5'- cGCgGCCgGcGGUGCGGccggcgUCuGCCGCGg -3'
miRNA:   3'- -CGgCGGgUuCCACGUCa-----AGcUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 3859 1.12 0.000527
Target:  5'- cGCCGCCCAAGGUGCAGUUCGACCACGg -3'
miRNA:   3'- -CGGCGGGUUCCACGUCAAGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 5105 0.69 0.453485
Target:  5'- aUCGCgCGGuGGUGCAGcUCGAgCGCGg -3'
miRNA:   3'- cGGCGgGUU-CCACGUCaAGCUgGUGC- -5'
18852 3' -56.6 NC_004683.1 + 8366 0.66 0.674379
Target:  5'- --gGCCCAgucgGGGUGCA--UCGGCCGgGc -3'
miRNA:   3'- cggCGGGU----UCCACGUcaAGCUGGUgC- -5'
18852 3' -56.6 NC_004683.1 + 9403 0.67 0.596456
Target:  5'- aGCCGUCgCAGGGgacGCcccauucggCGACCACGg -3'
miRNA:   3'- -CGGCGG-GUUCCa--CGucaa-----GCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 10044 0.69 0.493281
Target:  5'- cGCCGCCgA----GCcGUUCGGCCGCGg -3'
miRNA:   3'- -CGGCGGgUuccaCGuCAAGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 10605 0.77 0.169589
Target:  5'- cGCCGCgCUGAGGUGCGGg-CGGuCCGCGa -3'
miRNA:   3'- -CGGCG-GGUUCCACGUCaaGCU-GGUGC- -5'
18852 3' -56.6 NC_004683.1 + 11016 0.68 0.549361
Target:  5'- aGUCGCUCGAGGacaaccugcggucccUGCAGUUCGGuguCCAg- -3'
miRNA:   3'- -CGGCGGGUUCC---------------ACGUCAAGCU---GGUgc -5'
18852 3' -56.6 NC_004683.1 + 11559 0.71 0.395454
Target:  5'- gGCCGCCCAAugcauccgcuGGUugGCGGUcagggguggccgUGACCACGg -3'
miRNA:   3'- -CGGCGGGUU----------CCA--CGUCAa-----------GCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 12476 0.67 0.609428
Target:  5'- gGCUGUCCGAGGcgcaGCAGggC-ACCugGa -3'
miRNA:   3'- -CGGCGGGUUCCa---CGUCaaGcUGGugC- -5'
18852 3' -56.6 NC_004683.1 + 12943 0.74 0.257561
Target:  5'- gGCCGCCCcaccGGUGgcCGGUcucugUCGACCACa -3'
miRNA:   3'- -CGGCGGGuu--CCAC--GUCA-----AGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 13494 0.68 0.555725
Target:  5'- aGCC-CCCAcgAGG-GCAGgcugaucgUGACCACGu -3'
miRNA:   3'- -CGGcGGGU--UCCaCGUCaa------GCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 14732 0.71 0.388322
Target:  5'- cGCUGCCCGAGG-GCg---CGGCCaACGa -3'
miRNA:   3'- -CGGCGGGUUCCaCGucaaGCUGG-UGC- -5'
18852 3' -56.6 NC_004683.1 + 14897 0.74 0.264146
Target:  5'- cGUCGUCUGAGGgcgGCAGUgUGACCACc -3'
miRNA:   3'- -CGGCGGGUUCCa--CGUCAaGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 15893 0.67 0.577083
Target:  5'- aGCuCGCCCGAa-UGCAGgaCGACCuCGa -3'
miRNA:   3'- -CG-GCGGGUUccACGUCaaGCUGGuGC- -5'
18852 3' -56.6 NC_004683.1 + 16036 0.73 0.291855
Target:  5'- uCCGCaCCAAGG-GCAGUagcgaccucgUUGGCCACa -3'
miRNA:   3'- cGGCG-GGUUCCaCGUCA----------AGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 17467 0.69 0.46229
Target:  5'- cGCCGCgugaccgcgaguuCCu-GGUGCAGaUCGGCgACGg -3'
miRNA:   3'- -CGGCG-------------GGuuCCACGUCaAGCUGgUGC- -5'
18852 3' -56.6 NC_004683.1 + 19992 0.68 0.566378
Target:  5'- cGCCGagacgCCGAGuccgcGCAGgaCGACCACGg -3'
miRNA:   3'- -CGGCg----GGUUCca---CGUCaaGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 20053 0.66 0.652777
Target:  5'- aCCGCCgGGGcGaugGCGGauucUCGACCACa -3'
miRNA:   3'- cGGCGGgUUC-Ca--CGUCa---AGCUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.