miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18852 3' -56.6 NC_004683.1 + 12476 0.67 0.609428
Target:  5'- gGCUGUCCGAGGcgcaGCAGggC-ACCugGa -3'
miRNA:   3'- -CGGCGGGUUCCa---CGUCaaGcUGGugC- -5'
18852 3' -56.6 NC_004683.1 + 37040 0.68 0.534604
Target:  5'- gGCUGCCCcuuGGGGUaccccggcgggGCGGUUCgGGCgGCGa -3'
miRNA:   3'- -CGGCGGG---UUCCA-----------CGUCAAG-CUGgUGC- -5'
18852 3' -56.6 NC_004683.1 + 46312 0.68 0.545131
Target:  5'- cGCgGCCCGAGGcGguGUgccCGACgUGCGg -3'
miRNA:   3'- -CGgCGGGUUCCaCguCAa--GCUG-GUGC- -5'
18852 3' -56.6 NC_004683.1 + 25135 0.68 0.545131
Target:  5'- gGCCGCCgucaccGGUGCGGguagCGGCCugcuCGg -3'
miRNA:   3'- -CGGCGGguu---CCACGUCaa--GCUGGu---GC- -5'
18852 3' -56.6 NC_004683.1 + 25557 0.68 0.545131
Target:  5'- cGCCGCCCu-GGccGCGG-UCGGCaACGg -3'
miRNA:   3'- -CGGCGGGuuCCa-CGUCaAGCUGgUGC- -5'
18852 3' -56.6 NC_004683.1 + 11016 0.68 0.549361
Target:  5'- aGUCGCUCGAGGacaaccugcggucccUGCAGUUCGGuguCCAg- -3'
miRNA:   3'- -CGGCGGGUUCC---------------ACGUCAAGCU---GGUgc -5'
18852 3' -56.6 NC_004683.1 + 15893 0.67 0.577083
Target:  5'- aGCuCGCCCGAa-UGCAGgaCGACCuCGa -3'
miRNA:   3'- -CG-GCGGGUUccACGUCaaGCUGGuGC- -5'
18852 3' -56.6 NC_004683.1 + 31522 0.67 0.587831
Target:  5'- gGCCGa-CAuGGUGuCGGcgUCGGCCACGc -3'
miRNA:   3'- -CGGCggGUuCCAC-GUCa-AGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 20428 0.67 0.598616
Target:  5'- gGCgGCaCCGGcGGUGCAGg--GGCCACc -3'
miRNA:   3'- -CGgCG-GGUU-CCACGUCaagCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 42602 0.69 0.503482
Target:  5'- gGUCGUCCGgcuGGG-GUGGUcggCGACCGCGa -3'
miRNA:   3'- -CGGCGGGU---UCCaCGUCAa--GCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 10044 0.69 0.493281
Target:  5'- cGCCGCCgA----GCcGUUCGGCCGCGg -3'
miRNA:   3'- -CGGCGGgUuccaCGuCAAGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 17467 0.69 0.46229
Target:  5'- cGCCGCgugaccgcgaguuCCu-GGUGCAGaUCGGCgACGg -3'
miRNA:   3'- -CGGCG-------------GGuuCCACGUCaAGCUGgUGC- -5'
18852 3' -56.6 NC_004683.1 + 10605 0.77 0.169589
Target:  5'- cGCCGCgCUGAGGUGCGGg-CGGuCCGCGa -3'
miRNA:   3'- -CGGCG-GGUUCCACGUCaaGCU-GGUGC- -5'
18852 3' -56.6 NC_004683.1 + 12943 0.74 0.257561
Target:  5'- gGCCGCCCcaccGGUGgcCGGUcucugUCGACCACa -3'
miRNA:   3'- -CGGCGGGuu--CCAC--GUCA-----AGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 53544 0.73 0.284721
Target:  5'- uCCGCCCAAGGUcaccaucgaGCAGggCaacGCCGCGg -3'
miRNA:   3'- cGGCGGGUUCCA---------CGUCaaGc--UGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 16036 0.73 0.291855
Target:  5'- uCCGCaCCAAGG-GCAGUagcgaccucgUUGGCCACa -3'
miRNA:   3'- cGGCG-GGUUCCaCGUCA----------AGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 46402 0.72 0.321785
Target:  5'- -gCGCCCAGuacguguaccGGUGCccgUCGACCACGu -3'
miRNA:   3'- cgGCGGGUU----------CCACGucaAGCUGGUGC- -5'
18852 3' -56.6 NC_004683.1 + 14732 0.71 0.388322
Target:  5'- cGCUGCCCGAGG-GCg---CGGCCaACGa -3'
miRNA:   3'- -CGGCGGGUUCCaCGucaaGCUGG-UGC- -5'
18852 3' -56.6 NC_004683.1 + 21939 0.7 0.40631
Target:  5'- uCCGCCCGGcGGUgGCGGg-CGGCCGCc -3'
miRNA:   3'- cGGCGGGUU-CCA-CGUCaaGCUGGUGc -5'
18852 3' -56.6 NC_004683.1 + 41660 0.69 0.453485
Target:  5'- uGgCGCUCGAGGUGCg---CGACUACa -3'
miRNA:   3'- -CgGCGGGUUCCACGucaaGCUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.