miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18852 5' -54.2 NC_004683.1 + 25113 0.66 0.838891
Target:  5'- aCCCGg---CGGCguugcCGGUCCUGGcCGCc -3'
miRNA:   3'- -GGGUacuaGCCGa----GCUAGGGCUaGCG- -5'
18852 5' -54.2 NC_004683.1 + 42082 0.66 0.838891
Target:  5'- cCCCAcGAUCGGCggGAUcagcagcaCCCGcgaaCGCa -3'
miRNA:   3'- -GGGUaCUAGCCGagCUA--------GGGCua--GCG- -5'
18852 5' -54.2 NC_004683.1 + 30254 0.66 0.830098
Target:  5'- --gGUGGUCGGUgcgCGAUgCCGccggCGCa -3'
miRNA:   3'- gggUACUAGCCGa--GCUAgGGCua--GCG- -5'
18852 5' -54.2 NC_004683.1 + 4284 0.66 0.830098
Target:  5'- aCCuUGGaCGGCUCcauGAcCCCGAgcagCGCa -3'
miRNA:   3'- gGGuACUaGCCGAG---CUaGGGCUa---GCG- -5'
18852 5' -54.2 NC_004683.1 + 34762 0.66 0.821103
Target:  5'- aCgAUGAgugguggCGGCUCGucgCCCGccccgCGCa -3'
miRNA:   3'- gGgUACUa------GCCGAGCua-GGGCua---GCG- -5'
18852 5' -54.2 NC_004683.1 + 34605 0.66 0.81745
Target:  5'- gCCCAUGAUCGcaaaugaauagucCUCGAccgaaCCCGGcagCGCg -3'
miRNA:   3'- -GGGUACUAGCc------------GAGCUa----GGGCUa--GCG- -5'
18852 5' -54.2 NC_004683.1 + 46026 0.66 0.811913
Target:  5'- uUCAUGGUCGcGCcaUCGAggCCCauUCGCg -3'
miRNA:   3'- gGGUACUAGC-CG--AGCUa-GGGcuAGCG- -5'
18852 5' -54.2 NC_004683.1 + 5444 0.66 0.80254
Target:  5'- gCCGUgcgugaugGAUCaGGUcgcCGAUgCCGAUCGCg -3'
miRNA:   3'- gGGUA--------CUAG-CCGa--GCUAgGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 21304 0.66 0.80254
Target:  5'- cCCgGUGuguUCGGCUCGGaCCuCGGacugggCGCg -3'
miRNA:   3'- -GGgUACu--AGCCGAGCUaGG-GCUa-----GCG- -5'
18852 5' -54.2 NC_004683.1 + 19621 0.66 0.80254
Target:  5'- gUCCGacgaGAUCGaGUg-GAUCCgCGAUCGCg -3'
miRNA:   3'- -GGGUa---CUAGC-CGagCUAGG-GCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 9106 0.66 0.797788
Target:  5'- gCCCGUGAcgggauuccaugUGGCgUCGGUCCacucaaugcccgugUGGUCGCu -3'
miRNA:   3'- -GGGUACUa-----------GCCG-AGCUAGG--------------GCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 3229 0.66 0.792993
Target:  5'- cCCCGUGAucgUCGGaCUgucCGAgggCCUGGcCGCg -3'
miRNA:   3'- -GGGUACU---AGCC-GA---GCUa--GGGCUaGCG- -5'
18852 5' -54.2 NC_004683.1 + 3341 0.66 0.792993
Target:  5'- gCCA-GGUC-GCggCGggCCUGAUCGCg -3'
miRNA:   3'- gGGUaCUAGcCGa-GCuaGGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 14312 0.66 0.792993
Target:  5'- uCCUGUGugggcacacucAUCGGCggccgcCGAUCUCG-UCGCg -3'
miRNA:   3'- -GGGUAC-----------UAGCCGa-----GCUAGGGCuAGCG- -5'
18852 5' -54.2 NC_004683.1 + 53713 0.67 0.787186
Target:  5'- cCCaCAUGGUgCGGCUgcgguaagugcacgcCGAccggCCCGAUCaGCu -3'
miRNA:   3'- -GG-GUACUA-GCCGA---------------GCUa---GGGCUAG-CG- -5'
18852 5' -54.2 NC_004683.1 + 43102 0.67 0.783283
Target:  5'- gCCgCGUGAUgucagcgcCGGCgCGGUCCuCGGUgGCc -3'
miRNA:   3'- -GG-GUACUA--------GCCGaGCUAGG-GCUAgCG- -5'
18852 5' -54.2 NC_004683.1 + 36783 0.67 0.780339
Target:  5'- cCCCGccGGUCguuccugguguugaGGCcgCGggCCCGAUCGUg -3'
miRNA:   3'- -GGGUa-CUAG--------------CCGa-GCuaGGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 38813 0.67 0.773419
Target:  5'- aCCGUGAcggCGGCuUCGGggUCCGGcCGCc -3'
miRNA:   3'- gGGUACUa--GCCG-AGCUa-GGGCUaGCG- -5'
18852 5' -54.2 NC_004683.1 + 40552 0.67 0.763414
Target:  5'- gCCC---GUCGcGCUCGAUCgCGGUCa- -3'
miRNA:   3'- -GGGuacUAGC-CGAGCUAGgGCUAGcg -5'
18852 5' -54.2 NC_004683.1 + 33646 0.67 0.763414
Target:  5'- uUCAUGAUgCGGCUCGGgaUgCCGcgCuGCa -3'
miRNA:   3'- gGGUACUA-GCCGAGCU--AgGGCuaG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.