miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18852 5' -54.2 NC_004683.1 + 3893 1.13 0.000921
Target:  5'- cCCCAUGAUCGGCUCGAUCCCGAUCGCc -3'
miRNA:   3'- -GGGUACUAGCCGAGCUAGGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 18100 0.79 0.190493
Target:  5'- aCCUAUcaGAUCGGCaCGAUCgCGGUCGCc -3'
miRNA:   3'- -GGGUA--CUAGCCGaGCUAGgGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 25531 0.74 0.365874
Target:  5'- gCCGUGccgcugUGGCUCGG-CCUGGUCGCc -3'
miRNA:   3'- gGGUACua----GCCGAGCUaGGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 31889 0.74 0.38321
Target:  5'- aCCCAUcGUCGGCUCGGg-CCGGU-GCa -3'
miRNA:   3'- -GGGUAcUAGCCGAGCUagGGCUAgCG- -5'
18852 5' -54.2 NC_004683.1 + 36105 0.73 0.41948
Target:  5'- cCCCAUGAggUCGGg-CGAUCUcgucgaucggCGAUCGCu -3'
miRNA:   3'- -GGGUACU--AGCCgaGCUAGG----------GCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 13556 0.72 0.47758
Target:  5'- uUCCAUGcaGUCGGCguaGAgCCgGAUCGCc -3'
miRNA:   3'- -GGGUAC--UAGCCGag-CUaGGgCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 32540 0.71 0.560605
Target:  5'- cUCgGUGGccggCGGCUUGGUCCCgccguagccgacGAUCGCc -3'
miRNA:   3'- -GGgUACUa---GCCGAGCUAGGG------------CUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 3137 0.7 0.582054
Target:  5'- gCCgauGUGGUCGGCUCGAaCCUgcaggaGAUCGa -3'
miRNA:   3'- gGG---UACUAGCCGAGCUaGGG------CUAGCg -5'
18852 5' -54.2 NC_004683.1 + 34540 0.7 0.592843
Target:  5'- gCCAUGAUCGGCaugucucuagcuUCG-UCCaaGUCGCc -3'
miRNA:   3'- gGGUACUAGCCG------------AGCuAGGgcUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 51254 0.69 0.647098
Target:  5'- gCCCGUGGgcugguugcccUGGC-CGGUgCCGGUCGUg -3'
miRNA:   3'- -GGGUACUa----------GCCGaGCUAgGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 16401 0.69 0.657947
Target:  5'- gCC-UGGuUCGGaUCGAUCCUGAcCGCg -3'
miRNA:   3'- gGGuACU-AGCCgAGCUAGGGCUaGCG- -5'
18852 5' -54.2 NC_004683.1 + 53371 0.69 0.66228
Target:  5'- cCUCAUGGagaaCGGCgcgaucuaccugccCGAUCCCGAUgCGCc -3'
miRNA:   3'- -GGGUACUa---GCCGa-------------GCUAGGGCUA-GCG- -5'
18852 5' -54.2 NC_004683.1 + 51023 0.69 0.679565
Target:  5'- gCCCAgcagcugGGagGGCUCGccguUgCCGAUCGUg -3'
miRNA:   3'- -GGGUa------CUagCCGAGCu---AgGGCUAGCG- -5'
18852 5' -54.2 NC_004683.1 + 28692 0.67 0.743019
Target:  5'- gCCCAgcgcCGGCUUcaGAUCCCGuGUCGa -3'
miRNA:   3'- -GGGUacuaGCCGAG--CUAGGGC-UAGCg -5'
18852 5' -54.2 NC_004683.1 + 23039 0.67 0.743019
Target:  5'- uCCCGUgGGUCGGuCUCGGUgUCGGccUGCu -3'
miRNA:   3'- -GGGUA-CUAGCC-GAGCUAgGGCUa-GCG- -5'
18852 5' -54.2 NC_004683.1 + 17517 0.67 0.753276
Target:  5'- uUCCGUGAUCcacuuccaGGCgaGGUCCUGGcCGCg -3'
miRNA:   3'- -GGGUACUAG--------CCGagCUAGGGCUaGCG- -5'
18852 5' -54.2 NC_004683.1 + 54597 0.67 0.753276
Target:  5'- aCCCGUaAUCGGCgCGAcgUCgCCGAccggacgaUCGCc -3'
miRNA:   3'- -GGGUAcUAGCCGaGCU--AG-GGCU--------AGCG- -5'
18852 5' -54.2 NC_004683.1 + 33646 0.67 0.763414
Target:  5'- uUCAUGAUgCGGCUCGGgaUgCCGcgCuGCa -3'
miRNA:   3'- gGGUACUA-GCCGAGCU--AgGGCuaG-CG- -5'
18852 5' -54.2 NC_004683.1 + 40552 0.67 0.763414
Target:  5'- gCCC---GUCGcGCUCGAUCgCGGUCa- -3'
miRNA:   3'- -GGGuacUAGC-CGAGCUAGgGCUAGcg -5'
18852 5' -54.2 NC_004683.1 + 38813 0.67 0.773419
Target:  5'- aCCGUGAcggCGGCuUCGGggUCCGGcCGCc -3'
miRNA:   3'- gGGUACUa--GCCG-AGCUa-GGGCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.