miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18853 3' -55.8 NC_004683.1 + 17896 0.66 0.685158
Target:  5'- uGGUCAgCCGCGA-GAcGCAGC-GCUUc -3'
miRNA:   3'- uCUAGUaGGCGCUgCU-CGUCGuCGAG- -5'
18853 3' -55.8 NC_004683.1 + 47285 0.66 0.685158
Target:  5'- cGGUCGgccaCCGCGuuggugcccAUGAGCgcgaugcacAGCAGCUCc -3'
miRNA:   3'- uCUAGUa---GGCGC---------UGCUCG---------UCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 48208 0.66 0.685158
Target:  5'- --cUCggCCGCGACGAGgGGCcGUUg -3'
miRNA:   3'- ucuAGuaGGCGCUGCUCgUCGuCGAg -5'
18853 3' -55.8 NC_004683.1 + 12699 0.66 0.667584
Target:  5'- cGGAUCG-CCGCGuCGAGCcGCgucgucuucggugccAGCUUc -3'
miRNA:   3'- -UCUAGUaGGCGCuGCUCGuCG---------------UCGAG- -5'
18853 3' -55.8 NC_004683.1 + 50591 0.66 0.663175
Target:  5'- uGAUCGUCgGCGACGuGUucccucGCGacauGCUCg -3'
miRNA:   3'- uCUAGUAGgCGCUGCuCGu-----CGU----CGAG- -5'
18853 3' -55.8 NC_004683.1 + 7682 0.66 0.653238
Target:  5'- cGGGUCAguuccuccacgugugCCGCGACGucGUcgGGCAGCg- -3'
miRNA:   3'- -UCUAGUa--------------GGCGCUGCu-CG--UCGUCGag -5'
18853 3' -55.8 NC_004683.1 + 21593 0.66 0.652133
Target:  5'- uGAUCAccaUCggCGCGugGGGUgagGGCGGCUg -3'
miRNA:   3'- uCUAGU---AG--GCGCugCUCG---UCGUCGAg -5'
18853 3' -55.8 NC_004683.1 + 47554 0.66 0.652133
Target:  5'- gAGAUaGUCgGUGGCuuGGGCGGCGGcCUCc -3'
miRNA:   3'- -UCUAgUAGgCGCUG--CUCGUCGUC-GAG- -5'
18853 3' -55.8 NC_004683.1 + 26741 0.66 0.648817
Target:  5'- ---cCGUCUGCGAUGAGCuucuuugccaccucGGCGGUUUc -3'
miRNA:   3'- ucuaGUAGGCGCUGCUCG--------------UCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 25004 0.66 0.641073
Target:  5'- uGGuUCAUCCGCGccgagacCGAGCuGCcGUUCg -3'
miRNA:   3'- -UCuAGUAGGCGCu------GCUCGuCGuCGAG- -5'
18853 3' -55.8 NC_004683.1 + 38453 0.67 0.618939
Target:  5'- cGAUC-UCCGCGAuCGAgaacggucaccGCGGCGcaagcGCUCg -3'
miRNA:   3'- uCUAGuAGGCGCU-GCU-----------CGUCGU-----CGAG- -5'
18853 3' -55.8 NC_004683.1 + 34934 0.67 0.607884
Target:  5'- aGGGUCAUCCguuGCGACGgccucGGCcGuCAGCUg -3'
miRNA:   3'- -UCUAGUAGG---CGCUGC-----UCGuC-GUCGAg -5'
18853 3' -55.8 NC_004683.1 + 52639 0.67 0.60126
Target:  5'- gAGAccgCAUCCGCaaugaauacggccucGGCGAGCAacuugcGCuGCUCg -3'
miRNA:   3'- -UCUa--GUAGGCG---------------CUGCUCGU------CGuCGAG- -5'
18853 3' -55.8 NC_004683.1 + 42235 0.67 0.59685
Target:  5'- cAGAUCGUuggCCGCGcccuCGGGCAGCGaccaCUCc -3'
miRNA:   3'- -UCUAGUA---GGCGCu---GCUCGUCGUc---GAG- -5'
18853 3' -55.8 NC_004683.1 + 47351 0.67 0.59685
Target:  5'- cGGUCGguggCCGCGACaaGGGCAuGCAGgUUu -3'
miRNA:   3'- uCUAGUa---GGCGCUG--CUCGU-CGUCgAG- -5'
18853 3' -55.8 NC_004683.1 + 42931 0.67 0.585847
Target:  5'- cGGAgaagcCGaCCGCGACGGGCAuGUGGCg- -3'
miRNA:   3'- -UCUa----GUaGGCGCUGCUCGU-CGUCGag -5'
18853 3' -55.8 NC_004683.1 + 42634 0.67 0.585847
Target:  5'- cGA-CGcCCGCGACGAGauCGGCGGC-Cg -3'
miRNA:   3'- uCUaGUaGGCGCUGCUC--GUCGUCGaG- -5'
18853 3' -55.8 NC_004683.1 + 16426 0.67 0.585847
Target:  5'- cGAUCGagCGCGACGGGCucaacccgcaGGCGcugcuggagauGCUCa -3'
miRNA:   3'- uCUAGUagGCGCUGCUCG----------UCGU-----------CGAG- -5'
18853 3' -55.8 NC_004683.1 + 743 0.67 0.585847
Target:  5'- --uUCAUCac---CGAGCAGCGGCUCa -3'
miRNA:   3'- ucuAGUAGgcgcuGCUCGUCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 15956 0.67 0.585847
Target:  5'- gAGGUCAcugcccuggggUCCGCaguccagacGCGGGUAGCAGCg- -3'
miRNA:   3'- -UCUAGU-----------AGGCGc--------UGCUCGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.