miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18853 3' -55.8 NC_004683.1 + 2164 0.67 0.574883
Target:  5'- -aGUUGUCgGCGAuCGGGUAGCAGUcgUCa -3'
miRNA:   3'- ucUAGUAGgCGCU-GCUCGUCGUCG--AG- -5'
18853 3' -55.8 NC_004683.1 + 52081 0.67 0.573789
Target:  5'- cGAUCGgacgcgggccaguUCgGCGGCGcGCuccaGGCGGCUCa -3'
miRNA:   3'- uCUAGU-------------AGgCGCUGCuCG----UCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 44300 0.67 0.573789
Target:  5'- cGGAUCGgguuagCCGCGcugaucgccgacaGCGGGCccAGCAGCg- -3'
miRNA:   3'- -UCUAGUa-----GGCGC-------------UGCUCG--UCGUCGag -5'
18853 3' -55.8 NC_004683.1 + 48318 0.67 0.571603
Target:  5'- cAGGUCGUCgCGCagcugcccauccugGGCGAGCGGCgaccAGCg- -3'
miRNA:   3'- -UCUAGUAG-GCG--------------CUGCUCGUCG----UCGag -5'
18853 3' -55.8 NC_004683.1 + 41734 0.68 0.563967
Target:  5'- cGAUCAucUCCGuCGAccCGGGCgcGGCAGCg- -3'
miRNA:   3'- uCUAGU--AGGC-GCU--GCUCG--UCGUCGag -5'
18853 3' -55.8 NC_004683.1 + 32691 0.68 0.553106
Target:  5'- cAGGUCGUCU--GGC-AGUGGCAGCUCg -3'
miRNA:   3'- -UCUAGUAGGcgCUGcUCGUCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 4182 0.68 0.553106
Target:  5'- --cUCGUCgGCcucGGCGAGCAGCGcCUCu -3'
miRNA:   3'- ucuAGUAGgCG---CUGCUCGUCGUcGAG- -5'
18853 3' -55.8 NC_004683.1 + 3843 0.68 0.552023
Target:  5'- cGGUCGuUCCGCGAguCGccgcccaAGguGCAGUUCg -3'
miRNA:   3'- uCUAGU-AGGCGCU--GC-------UCguCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 16659 0.68 0.542308
Target:  5'- cGGGUCAccgCCGCGGCGAugcccucgGCGaugccagcgcGCAGUUCg -3'
miRNA:   3'- -UCUAGUa--GGCGCUGCU--------CGU----------CGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 1569 0.69 0.499894
Target:  5'- uGGaAUCGUCC-CGGCGGcccGCGGCGGCa- -3'
miRNA:   3'- -UC-UAGUAGGcGCUGCU---CGUCGUCGag -5'
18853 3' -55.8 NC_004683.1 + 12227 0.69 0.459012
Target:  5'- uGGAUC-UCgGCGACGAGCuuGuCGGcCUCg -3'
miRNA:   3'- -UCUAGuAGgCGCUGCUCGu-C-GUC-GAG- -5'
18853 3' -55.8 NC_004683.1 + 53631 0.7 0.439249
Target:  5'- cGAUCAggcccgCCGCGACcuGGCcGCGGCUg -3'
miRNA:   3'- uCUAGUa-----GGCGCUGc-UCGuCGUCGAg -5'
18853 3' -55.8 NC_004683.1 + 23794 0.7 0.439249
Target:  5'- cGAUCgcGUCCGCaGCcuGCAGCAGUUCc -3'
miRNA:   3'- uCUAG--UAGGCGcUGcuCGUCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 31935 0.7 0.429551
Target:  5'- gAGAUCugcgCCGaguagauGACGAaCGGCAGCUCg -3'
miRNA:   3'- -UCUAGua--GGCg------CUGCUcGUCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 38790 0.7 0.428588
Target:  5'- cGAU-GUCCgGCGACGAGCcggugaccgugacGGCGGCUUc -3'
miRNA:   3'- uCUAgUAGG-CGCUGCUCG-------------UCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 10948 0.7 0.41998
Target:  5'- gGGAccgcUCGgccgCCGCGuCGGGCAGCA-CUCg -3'
miRNA:   3'- -UCU----AGUa---GGCGCuGCUCGUCGUcGAG- -5'
18853 3' -55.8 NC_004683.1 + 41077 0.7 0.41998
Target:  5'- gAGGUCGUCCuGCauucgGGCGAGCuucucAGCGGcCUCa -3'
miRNA:   3'- -UCUAGUAGG-CG-----CUGCUCG-----UCGUC-GAG- -5'
18853 3' -55.8 NC_004683.1 + 48574 0.7 0.401232
Target:  5'- uGAUCGUCgGCGGCGAG-AGCGGa-- -3'
miRNA:   3'- uCUAGUAGgCGCUGCUCgUCGUCgag -5'
18853 3' -55.8 NC_004683.1 + 25859 0.7 0.401232
Target:  5'- ----gGUUCGCGACGgcuGGCuGCGGCUCg -3'
miRNA:   3'- ucuagUAGGCGCUGC---UCGuCGUCGAG- -5'
18853 3' -55.8 NC_004683.1 + 23711 0.71 0.383025
Target:  5'- --uUCcgCCGCGGCGgcaccGGCGGCGGCa- -3'
miRNA:   3'- ucuAGuaGGCGCUGC-----UCGUCGUCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.