miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18853 5' -58.2 NC_004683.1 + 52629 0.66 0.584419
Target:  5'- -cGUGCCaGCACGUGuucaccgACGAGGaACGc -3'
miRNA:   3'- gaCGCGG-CGUGCACca-----UGCUCC-UGCa -5'
18853 5' -58.2 NC_004683.1 + 35809 0.66 0.563217
Target:  5'- -gGUGCCGaCAcCGUGGUccGCGgccGGGAUGUu -3'
miRNA:   3'- gaCGCGGC-GU-GCACCA--UGC---UCCUGCA- -5'
18853 5' -58.2 NC_004683.1 + 22345 0.66 0.563217
Target:  5'- -cGCGCUGC-CG-GGUucgguCGAGGACu- -3'
miRNA:   3'- gaCGCGGCGuGCaCCAu----GCUCCUGca -5'
18853 5' -58.2 NC_004683.1 + 39630 0.66 0.552692
Target:  5'- -gGCGCCGC-CGgGGUGgcgaccCGAGGGCc- -3'
miRNA:   3'- gaCGCGGCGuGCaCCAU------GCUCCUGca -5'
18853 5' -58.2 NC_004683.1 + 26336 0.67 0.542226
Target:  5'- -gGCGCUGU-CGgcGGUGCGAGGccGCGUu -3'
miRNA:   3'- gaCGCGGCGuGCa-CCAUGCUCC--UGCA- -5'
18853 5' -58.2 NC_004683.1 + 10546 0.67 0.531827
Target:  5'- cCUGguUGCgGCACGUGGU-CGAcGGGCa- -3'
miRNA:   3'- -GAC--GCGgCGUGCACCAuGCU-CCUGca -5'
18853 5' -58.2 NC_004683.1 + 14324 0.67 0.501091
Target:  5'- -cGgGCCGCugGUGGU-CGGaugugcGGugGUu -3'
miRNA:   3'- gaCgCGGCGugCACCAuGCU------CCugCA- -5'
18853 5' -58.2 NC_004683.1 + 46583 0.67 0.491018
Target:  5'- gCUGcCGCUGCugGUgccGGU-CGAGGGCc- -3'
miRNA:   3'- -GAC-GCGGCGugCA---CCAuGCUCCUGca -5'
18853 5' -58.2 NC_004683.1 + 1531 0.68 0.48104
Target:  5'- -gGCGUgGC-CG-GGUaucGCGAGGACGg -3'
miRNA:   3'- gaCGCGgCGuGCaCCA---UGCUCCUGCa -5'
18853 5' -58.2 NC_004683.1 + 6365 0.68 0.48104
Target:  5'- -cGUGCCcCGCGUGGUGCGccccGGCGa -3'
miRNA:   3'- gaCGCGGcGUGCACCAUGCuc--CUGCa -5'
18853 5' -58.2 NC_004683.1 + 10603 0.68 0.432727
Target:  5'- -cGCGCCGCGCugaGGUGCG-GG-CGg -3'
miRNA:   3'- gaCGCGGCGUGca-CCAUGCuCCuGCa -5'
18853 5' -58.2 NC_004683.1 + 21584 0.69 0.399747
Target:  5'- -gGCGCgGCaugaucaccaucggcGCGUGGggUGAGGGCGg -3'
miRNA:   3'- gaCGCGgCG---------------UGCACCauGCUCCUGCa -5'
18853 5' -58.2 NC_004683.1 + 50721 0.7 0.345241
Target:  5'- uCUGCuGuUCGUGuCGUGGUGgGAGGACGUu -3'
miRNA:   3'- -GACG-C-GGCGU-GCACCAUgCUCCUGCA- -5'
18853 5' -58.2 NC_004683.1 + 53018 0.71 0.291976
Target:  5'- -cGCGCCGCccuCG-GGUGCGAGcACGg -3'
miRNA:   3'- gaCGCGGCGu--GCaCCAUGCUCcUGCa -5'
18853 5' -58.2 NC_004683.1 + 4141 1.06 0.000899
Target:  5'- gCUGCGCCGCACGUGGUACGAGGACGUu -3'
miRNA:   3'- -GACGCGGCGUGCACCAUGCUCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.