miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18855 3' -52.3 NC_004683.1 + 40979 0.66 0.876215
Target:  5'- uUGCGCGGG-UCGGUGcccgaugccucCAUGAGGUc -3'
miRNA:   3'- gGCGCGUCCaAGUCACu----------GUACUUCGa -5'
18855 3' -52.3 NC_004683.1 + 9676 0.66 0.876215
Target:  5'- aUCGCGCucauGGgcaccaacgCGGUGGCcgaccGUGAGGCg -3'
miRNA:   3'- -GGCGCGu---CCaa-------GUCACUG-----UACUUCGa -5'
18855 3' -52.3 NC_004683.1 + 426 0.66 0.876215
Target:  5'- -gGCGCAGG--CGGUGGC-UGgcGCg -3'
miRNA:   3'- ggCGCGUCCaaGUCACUGuACuuCGa -5'
18855 3' -52.3 NC_004683.1 + 2708 0.66 0.868184
Target:  5'- aCGCGgGgcGGUUCGGUgGGCAUGuuagguGGCa -3'
miRNA:   3'- gGCGCgU--CCAAGUCA-CUGUACu-----UCGa -5'
18855 3' -52.3 NC_004683.1 + 25765 0.66 0.868184
Target:  5'- aCC-CGCGGGggCAGUGuguuCGUGAGaacGCg -3'
miRNA:   3'- -GGcGCGUCCaaGUCACu---GUACUU---CGa -5'
18855 3' -52.3 NC_004683.1 + 13461 0.66 0.868184
Target:  5'- cCCGCGCAGGguggCGGcggcuuccagGGCGUGucgGGCc -3'
miRNA:   3'- -GGCGCGUCCaa--GUCa---------CUGUACu--UCGa -5'
18855 3' -52.3 NC_004683.1 + 44896 0.66 0.867367
Target:  5'- gCCGCGCucAGGUgggCggcagggGGUGGCggGggGCc -3'
miRNA:   3'- -GGCGCG--UCCAa--G-------UCACUGuaCuuCGa -5'
18855 3' -52.3 NC_004683.1 + 45028 0.66 0.841698
Target:  5'- cCCGCGCGGGcgCGcUGGCcUGAaucaacgcccgccAGCUg -3'
miRNA:   3'- -GGCGCGUCCaaGUcACUGuACU-------------UCGA- -5'
18855 3' -52.3 NC_004683.1 + 12035 0.67 0.833584
Target:  5'- cCCGCGCGGGgcUAcc-GCcgGAGGCUg -3'
miRNA:   3'- -GGCGCGUCCaaGUcacUGuaCUUCGA- -5'
18855 3' -52.3 NC_004683.1 + 6634 0.67 0.832671
Target:  5'- uCgGCGCGGGUgaacagCAGgcgGAucuucgggucgcuCAUGAAGCg -3'
miRNA:   3'- -GgCGCGUCCAa-----GUCa--CU-------------GUACUUCGa -5'
18855 3' -52.3 NC_004683.1 + 40131 0.67 0.824359
Target:  5'- aUCGCGUAcGGUUCGGUGAaguucacaccCAgcgagGggGCc -3'
miRNA:   3'- -GGCGCGU-CCAAGUCACU----------GUa----CuuCGa -5'
18855 3' -52.3 NC_004683.1 + 2646 0.67 0.805286
Target:  5'- cCUGCGCGGGUUCccaagugccGGUGcugucCAUGAGGa- -3'
miRNA:   3'- -GGCGCGUCCAAG---------UCACu----GUACUUCga -5'
18855 3' -52.3 NC_004683.1 + 51183 0.67 0.799412
Target:  5'- uCCGC-CAGGgcgaacgucucggCGGUGAC-UGGAGCg -3'
miRNA:   3'- -GGCGcGUCCaa-----------GUCACUGuACUUCGa -5'
18855 3' -52.3 NC_004683.1 + 13081 0.68 0.785457
Target:  5'- gCCGCGcCGGGUgucgCGGUagGGCAcGAGGUa -3'
miRNA:   3'- -GGCGC-GUCCAa---GUCA--CUGUaCUUCGa -5'
18855 3' -52.3 NC_004683.1 + 47459 0.68 0.772206
Target:  5'- aCGCGCAGGUgaugaaacgcgucgUCAcGUGugGgccgugGAGGCc -3'
miRNA:   3'- gGCGCGUCCA--------------AGU-CACugUa-----CUUCGa -5'
18855 3' -52.3 NC_004683.1 + 46213 0.68 0.743901
Target:  5'- aCGCGCAGGcgUUCGGU--CcgGggGCg -3'
miRNA:   3'- gGCGCGUCC--AAGUCAcuGuaCuuCGa -5'
18855 3' -52.3 NC_004683.1 + 54050 0.69 0.733187
Target:  5'- cUCGCGCAGGaucggcgUCAGccacGACAUGccGCg -3'
miRNA:   3'- -GGCGCGUCCa------AGUCa---CUGUACuuCGa -5'
18855 3' -52.3 NC_004683.1 + 47983 0.69 0.711453
Target:  5'- -aGCGCGGGUUC---GACGUGcAGCUc -3'
miRNA:   3'- ggCGCGUCCAAGucaCUGUACuUCGA- -5'
18855 3' -52.3 NC_004683.1 + 39603 0.69 0.678273
Target:  5'- aCCGgGUAGa-UCAGcGACAUGAGGCc -3'
miRNA:   3'- -GGCgCGUCcaAGUCaCUGUACUUCGa -5'
18855 3' -52.3 NC_004683.1 + 682 0.7 0.622208
Target:  5'- gUGUGCGGGgcgCAGUGAUccagGAGGCg -3'
miRNA:   3'- gGCGCGUCCaa-GUCACUGua--CUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.