miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18855 5' -52.8 NC_004683.1 + 21722 0.66 0.858201
Target:  5'- gCAGCGCcGCCGg--AUUCAACCc-- -3'
miRNA:   3'- aGUCGCGcUGGCagaUGAGUUGGaag -5'
18855 5' -52.8 NC_004683.1 + 16431 0.66 0.858201
Target:  5'- -gAGCGCGACgG---GCUCAACCcgCa -3'
miRNA:   3'- agUCGCGCUGgCagaUGAGUUGGaaG- -5'
18855 5' -52.8 NC_004683.1 + 17880 0.66 0.84965
Target:  5'- uUCGGCGCGcUCGUaUUGgUCAGCCg-- -3'
miRNA:   3'- -AGUCGCGCuGGCA-GAUgAGUUGGaag -5'
18855 5' -52.8 NC_004683.1 + 50143 0.66 0.840862
Target:  5'- gCGGCGCGACCgGUCcaGCgUCGACaCaUCg -3'
miRNA:   3'- aGUCGCGCUGG-CAGa-UG-AGUUG-GaAG- -5'
18855 5' -52.8 NC_004683.1 + 4461 0.66 0.840862
Target:  5'- gUCGGcCGCGAUCGcCUGCaCGugCUUg -3'
miRNA:   3'- -AGUC-GCGCUGGCaGAUGaGUugGAAg -5'
18855 5' -52.8 NC_004683.1 + 45457 0.66 0.831847
Target:  5'- aCGGCGcCGAaCG-CUGCUCGugcgguggggccACCUUCa -3'
miRNA:   3'- aGUCGC-GCUgGCaGAUGAGU------------UGGAAG- -5'
18855 5' -52.8 NC_004683.1 + 6896 0.66 0.822614
Target:  5'- aCGGCGCGAUCGUCgucaCGGCUa-- -3'
miRNA:   3'- aGUCGCGCUGGCAGaugaGUUGGaag -5'
18855 5' -52.8 NC_004683.1 + 55677 0.66 0.822614
Target:  5'- cCAcGCacaGCGACCGUCcgcUGCUCAACgCUg- -3'
miRNA:   3'- aGU-CG---CGCUGGCAG---AUGAGUUG-GAag -5'
18855 5' -52.8 NC_004683.1 + 54604 0.66 0.822614
Target:  5'- aUCGGCGCGA-CGUC-GC-CGACCg-- -3'
miRNA:   3'- -AGUCGCGCUgGCAGaUGaGUUGGaag -5'
18855 5' -52.8 NC_004683.1 + 52526 0.67 0.803538
Target:  5'- gCuGCGCG-UCGUCggACUCGGCCg-- -3'
miRNA:   3'- aGuCGCGCuGGCAGa-UGAGUUGGaag -5'
18855 5' -52.8 NC_004683.1 + 55715 0.67 0.793716
Target:  5'- gUCGGCgGCGACCGUC-ACaccgUCAugACgUUCg -3'
miRNA:   3'- -AGUCG-CGCUGGCAGaUG----AGU--UGgAAG- -5'
18855 5' -52.8 NC_004683.1 + 53509 0.67 0.793716
Target:  5'- aUUAGCGUguuGAUCGUCUcgGCgcgGACCUUCu -3'
miRNA:   3'- -AGUCGCG---CUGGCAGA--UGag-UUGGAAG- -5'
18855 5' -52.8 NC_004683.1 + 10361 0.67 0.793716
Target:  5'- -gGGCGCGgcggccuuGCCGUCgcggccCUCGACCggCa -3'
miRNA:   3'- agUCGCGC--------UGGCAGau----GAGUUGGaaG- -5'
18855 5' -52.8 NC_004683.1 + 3395 0.67 0.77356
Target:  5'- gCGGUGCGGCCGgcgUCUGCcgCGGCgUUg -3'
miRNA:   3'- aGUCGCGCUGGC---AGAUGa-GUUGgAAg -5'
18855 5' -52.8 NC_004683.1 + 26150 0.67 0.773559
Target:  5'- cCGGCGCGGCgGUCUcGCUgAuCCUc- -3'
miRNA:   3'- aGUCGCGCUGgCAGA-UGAgUuGGAag -5'
18855 5' -52.8 NC_004683.1 + 13882 0.67 0.763249
Target:  5'- aCAGCGCGACC-UCggcCUC-GCCgUCa -3'
miRNA:   3'- aGUCGCGCUGGcAGau-GAGuUGGaAG- -5'
18855 5' -52.8 NC_004683.1 + 26248 0.67 0.763248
Target:  5'- -gAGCGCGACaaUCUGCUC-GCCg-- -3'
miRNA:   3'- agUCGCGCUGgcAGAUGAGuUGGaag -5'
18855 5' -52.8 NC_004683.1 + 5828 0.68 0.752799
Target:  5'- cCA-CGUGGCCGUCcAgUCGGCCUUg -3'
miRNA:   3'- aGUcGCGCUGGCAGaUgAGUUGGAAg -5'
18855 5' -52.8 NC_004683.1 + 47123 0.68 0.751746
Target:  5'- aCAGCGCGACCGccucaagaacuuuUCgagucgGCUCGgcGCCg-- -3'
miRNA:   3'- aGUCGCGCUGGC-------------AGa-----UGAGU--UGGaag -5'
18855 5' -52.8 NC_004683.1 + 13134 0.68 0.742221
Target:  5'- aUCGGCGgGACCGgugcCgaugACcCGGCCUUUa -3'
miRNA:   3'- -AGUCGCgCUGGCa---Ga---UGaGUUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.