Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18855 | 5' | -52.8 | NC_004683.1 | + | 1691 | 0.75 | 0.373226 |
Target: 5'- gCAGCGCGGCCGgcgcgCUGCU--GCCUg- -3' miRNA: 3'- aGUCGCGCUGGCa----GAUGAguUGGAag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 3395 | 0.67 | 0.77356 |
Target: 5'- gCGGUGCGGCCGgcgUCUGCcgCGGCgUUg -3' miRNA: 3'- aGUCGCGCUGGC---AGAUGa-GUUGgAAg -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 4461 | 0.66 | 0.840862 |
Target: 5'- gUCGGcCGCGAUCGcCUGCaCGugCUUg -3' miRNA: 3'- -AGUC-GCGCUGGCaGAUGaGUugGAAg -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 4557 | 1.11 | 0.001234 |
Target: 5'- aUCAGCGCGACCGUCUACUCAACCUUCg -3' miRNA: 3'- -AGUCGCGCUGGCAGAUGAGUUGGAAG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 5339 | 0.68 | 0.731529 |
Target: 5'- gCAGCGCGACCGcgggCUcgggggcggGCUUGAUCgcgUCg -3' miRNA: 3'- aGUCGCGCUGGCa---GA---------UGAGUUGGa--AG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 5828 | 0.68 | 0.752799 |
Target: 5'- cCA-CGUGGCCGUCcAgUCGGCCUUg -3' miRNA: 3'- aGUcGCGCUGGCAGaUgAGUUGGAAg -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 6896 | 0.66 | 0.822614 |
Target: 5'- aCGGCGCGAUCGUCgucaCGGCUa-- -3' miRNA: 3'- aGUCGCGCUGGCAGaugaGUUGGaag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 9977 | 0.68 | 0.709846 |
Target: 5'- -aAGCGUcgagucGACUG-CUGCUCAACCUg- -3' miRNA: 3'- agUCGCG------CUGGCaGAUGAGUUGGAag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 10361 | 0.67 | 0.793716 |
Target: 5'- -gGGCGCGgcggccuuGCCGUCgcggccCUCGACCggCa -3' miRNA: 3'- agUCGCGC--------UGGCAGau----GAGUUGGaaG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 13134 | 0.68 | 0.742221 |
Target: 5'- aUCGGCGgGACCGgugcCgaugACcCGGCCUUUa -3' miRNA: 3'- -AGUCGCgCUGGCa---Ga---UGaGUUGGAAG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 13882 | 0.67 | 0.763249 |
Target: 5'- aCAGCGCGACC-UCggcCUC-GCCgUCa -3' miRNA: 3'- aGUCGCGCUGGcAGau-GAGuUGGaAG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 16431 | 0.66 | 0.858201 |
Target: 5'- -gAGCGCGACgG---GCUCAACCcgCa -3' miRNA: 3'- agUCGCGCUGgCagaUGAGUUGGaaG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 17245 | 0.69 | 0.697781 |
Target: 5'- aUCAGCGCGuuucuucGCCGUCgauugGCUgccguaGACCUUg -3' miRNA: 3'- -AGUCGCGC-------UGGCAGa----UGAg-----UUGGAAg -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 17880 | 0.66 | 0.84965 |
Target: 5'- uUCGGCGCGcUCGUaUUGgUCAGCCg-- -3' miRNA: 3'- -AGUCGCGCuGGCA-GAUgAGUUGGaag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 21722 | 0.66 | 0.858201 |
Target: 5'- gCAGCGCcGCCGg--AUUCAACCc-- -3' miRNA: 3'- aGUCGCGcUGGCagaUGAGUUGGaag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 26150 | 0.67 | 0.773559 |
Target: 5'- cCGGCGCGGCgGUCUcGCUgAuCCUc- -3' miRNA: 3'- aGUCGCGCUGgCAGA-UGAgUuGGAag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 26248 | 0.67 | 0.763248 |
Target: 5'- -gAGCGCGACaaUCUGCUC-GCCg-- -3' miRNA: 3'- agUCGCGCUGgcAGAUGAGuUGGaag -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 30724 | 0.71 | 0.554259 |
Target: 5'- cUCGGCGagcaGAUUGUCgcGCUCGACCUcuUCg -3' miRNA: 3'- -AGUCGCg---CUGGCAGa-UGAGUUGGA--AG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 37338 | 0.73 | 0.459032 |
Target: 5'- cUCGGCGCGAUCGcggaUCcACUCGAUCUcgUCg -3' miRNA: 3'- -AGUCGCGCUGGC----AGaUGAGUUGGA--AG- -5' |
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18855 | 5' | -52.8 | NC_004683.1 | + | 45457 | 0.66 | 0.831847 |
Target: 5'- aCGGCGcCGAaCG-CUGCUCGugcgguggggccACCUUCa -3' miRNA: 3'- aGUCGC-GCUgGCaGAUGAGU------------UGGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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