Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18858 | 3' | -57.6 | NC_004683.1 | + | 5236 | 0.65 | 0.589142 |
Target: 5'- aGUGCCUGGCgacgucgucgccGGCGuaccuGCGcGCCUGGUc -3' miRNA: 3'- cCGCGGACCGa-----------CCGCu----UGU-UGGACUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 52037 | 0.66 | 0.580444 |
Target: 5'- cGCGCCgaGGCUGG-GAACcguGCCcGAc -3' miRNA: 3'- cCGCGGa-CCGACCgCUUGu--UGGaCUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 35010 | 0.66 | 0.580444 |
Target: 5'- -cCGCCUGGCcGGUGAacucgGCGGCCg--- -3' miRNA: 3'- ccGCGGACCGaCCGCU-----UGUUGGacua -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 21162 | 0.66 | 0.569611 |
Target: 5'- cGCGCCUGaGcCUGGCGG--GACCccGAUa -3' miRNA: 3'- cCGCGGAC-C-GACCGCUugUUGGa-CUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 39629 | 0.66 | 0.569611 |
Target: 5'- gGGCGCCgccgGGgUGGCGAcccgAgGGCCg--- -3' miRNA: 3'- -CCGCGGa---CCgACCGCU----UgUUGGacua -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 20576 | 0.66 | 0.569611 |
Target: 5'- gGGCGUCUGGUggcGGCGGugcgGCGAUCa--- -3' miRNA: 3'- -CCGCGGACCGa--CCGCU----UGUUGGacua -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 32535 | 0.66 | 0.548104 |
Target: 5'- cGGCGCUcGG-UGGCcGGCGGCUUGGUc -3' miRNA: 3'- -CCGCGGaCCgACCGcUUGUUGGACUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 51130 | 0.66 | 0.548104 |
Target: 5'- aGGCGCCuUGGC-GGCGGugccgcgcgGCGAgCUGc- -3' miRNA: 3'- -CCGCGG-ACCGaCCGCU---------UGUUgGACua -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 9657 | 0.66 | 0.534261 |
Target: 5'- cGGCGaCCUgcucgaccaucgcgGGCUGGCucGGCAGCgUGAg -3' miRNA: 3'- -CCGC-GGA--------------CCGACCGc-UUGUUGgACUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 52492 | 0.67 | 0.520544 |
Target: 5'- cGCGCgCUGGCUcggcaagcacgugcaGGCGAucGCGGCCgacGAg -3' miRNA: 3'- cCGCG-GACCGA---------------CCGCU--UGUUGGa--CUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 54340 | 0.67 | 0.516351 |
Target: 5'- cGGCGuCCUGGaucaUGcGCGAgaGCAuguCCUGGg -3' miRNA: 3'- -CCGC-GGACCg---AC-CGCU--UGUu--GGACUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 11190 | 0.67 | 0.506967 |
Target: 5'- cGgGCCUGGUgagcgauuacgagcaGGCGuuCGACCUGAUc -3' miRNA: 3'- cCgCGGACCGa--------------CCGCuuGUUGGACUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 2127 | 0.67 | 0.499719 |
Target: 5'- cGC-CCUGGUggUGGCGGGCGuggccgugcuggcggGCCUGGg -3' miRNA: 3'- cCGcGGACCG--ACCGCUUGU---------------UGGACUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 51523 | 0.67 | 0.495598 |
Target: 5'- uGGCGacgaCCUGGCgGGCGaAACGACg-GAUg -3' miRNA: 3'- -CCGC----GGACCGaCCGC-UUGUUGgaCUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 21940 | 0.67 | 0.475231 |
Target: 5'- -cCGCCcGGCggUGGCGGGCGGCCgccGAg -3' miRNA: 3'- ccGCGGaCCG--ACCGCUUGUUGGa--CUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 32714 | 0.67 | 0.475231 |
Target: 5'- cGCGCC-GGCUGGCccGCGACUucgGAg -3' miRNA: 3'- cCGCGGaCCGACCGcuUGUUGGa--CUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 1379 | 0.67 | 0.475231 |
Target: 5'- aGCGCCUcGGCUGGCacGACAAgCCggcGAUc -3' miRNA: 3'- cCGCGGA-CCGACCGc-UUGUU-GGa--CUA- -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 44344 | 0.68 | 0.465205 |
Target: 5'- cGGCGCCgcggccaGGCUGGCGAcgAAUCgcacGAg -3' miRNA: 3'- -CCGCGGa------CCGACCGCUugUUGGa---CUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 50312 | 0.68 | 0.45529 |
Target: 5'- cGCGCCgcGGCcagcacGGCGucgauGGCAGCCUGAg -3' miRNA: 3'- cCGCGGa-CCGa-----CCGC-----UUGUUGGACUa -5' |
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18858 | 3' | -57.6 | NC_004683.1 | + | 30765 | 0.68 | 0.444517 |
Target: 5'- cGGCGuucucgaCCUGGCgGGCGAGCGcgUUGGUg -3' miRNA: 3'- -CCGC-------GGACCGaCCGCUUGUugGACUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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