miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18858 5' -57.1 NC_004683.1 + 13981 0.66 0.656547
Target:  5'- aAGggCCGGCAcccGUUggUGACGCUgugguccuacgaCGGGGCg -3'
miRNA:   3'- -UCuaGGCCGU---CAA--GCUGUGG------------GUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 49978 0.66 0.656547
Target:  5'- cAGGUCCGcGCucGGUcUCGACGUCUGGGcGCg -3'
miRNA:   3'- -UCUAGGC-CG--UCA-AGCUGUGGGUCC-CG- -5'
18858 5' -57.1 NC_004683.1 + 30411 0.66 0.656547
Target:  5'- ---aCCaGCAGggCGGCGCaaccagCCAGGGUg -3'
miRNA:   3'- ucuaGGcCGUCaaGCUGUG------GGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 9055 0.66 0.645734
Target:  5'- uGAcgCauaGCAGuUUUGGCAUCCGGGGCu -3'
miRNA:   3'- uCUa-Ggc-CGUC-AAGCUGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 37051 0.66 0.625164
Target:  5'- gGGGUaccCCGGCGGggcgguucgggcggCGAUGCCCAGGuCa -3'
miRNA:   3'- -UCUA---GGCCGUCaa------------GCUGUGGGUCCcG- -5'
18858 5' -57.1 NC_004683.1 + 13367 0.66 0.617587
Target:  5'- --cUCCGGUGGcggCGGCACgcugccauucaugggCCAGGGUg -3'
miRNA:   3'- ucuAGGCCGUCaa-GCUGUG---------------GGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 16116 0.66 0.61326
Target:  5'- ---gCCGGCGugcggcugccGUacuacaUCGACACCCAcgacuGGGCg -3'
miRNA:   3'- ucuaGGCCGU----------CA------AGCUGUGGGU-----CCCG- -5'
18858 5' -57.1 NC_004683.1 + 30267 0.66 0.602455
Target:  5'- cGAUgccgCCGGCGcacUCGACGugacaCCGGGGCg -3'
miRNA:   3'- uCUA----GGCCGUca-AGCUGUg----GGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 32503 0.66 0.599218
Target:  5'- cGGAUCCGGgcgcgguguagaucCAGaucuugCGGCGCUCGGuGGCc -3'
miRNA:   3'- -UCUAGGCC--------------GUCaa----GCUGUGGGUC-CCG- -5'
18858 5' -57.1 NC_004683.1 + 7834 0.67 0.595984
Target:  5'- gAGAUCgacgaCGGCgAGUUccgccgugucggaccCGACACCCcgaccaaggcgcAGGGCa -3'
miRNA:   3'- -UCUAG-----GCCG-UCAA---------------GCUGUGGG------------UCCCG- -5'
18858 5' -57.1 NC_004683.1 + 51941 0.67 0.559564
Target:  5'- cGGAaUCGGCAGUccUCGAUGCUgucGGGCu -3'
miRNA:   3'- -UCUaGGCCGUCA--AGCUGUGGgu-CCCG- -5'
18858 5' -57.1 NC_004683.1 + 7478 0.67 0.559564
Target:  5'- aAGAUCCcgccaGGCAG--CGGCGCaCC-GGGCu -3'
miRNA:   3'- -UCUAGG-----CCGUCaaGCUGUG-GGuCCCG- -5'
18858 5' -57.1 NC_004683.1 + 13461 0.67 0.559564
Target:  5'- ---cCCGcGCAGgguggCGGCGgcuUCCAGGGCg -3'
miRNA:   3'- ucuaGGC-CGUCaa---GCUGU---GGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 44724 0.67 0.548963
Target:  5'- cAGcgCCgGGCA--UCGGCACgCCGGGcGCu -3'
miRNA:   3'- -UCuaGG-CCGUcaAGCUGUG-GGUCC-CG- -5'
18858 5' -57.1 NC_004683.1 + 53853 0.67 0.548963
Target:  5'- ---aUCGGCA--UCGGCGCCC-GGGUa -3'
miRNA:   3'- ucuaGGCCGUcaAGCUGUGGGuCCCG- -5'
18858 5' -57.1 NC_004683.1 + 22695 0.67 0.548963
Target:  5'- aGGAUCgGGCucuacgccGGUUCGACGCgCGucGGCa -3'
miRNA:   3'- -UCUAGgCCG--------UCAAGCUGUGgGUc-CCG- -5'
18858 5' -57.1 NC_004683.1 + 43214 0.67 0.538426
Target:  5'- cGGGUUCGGCGGggccUGuuGCCCGGcGGUg -3'
miRNA:   3'- -UCUAGGCCGUCaa--GCugUGGGUC-CCG- -5'
18858 5' -57.1 NC_004683.1 + 15438 0.68 0.527958
Target:  5'- cAGAUCgaauCGGU-GUUCGGCaucgugccGCCgCAGGGCa -3'
miRNA:   3'- -UCUAG----GCCGuCAAGCUG--------UGG-GUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 25743 0.68 0.507259
Target:  5'- ---aCCGGCGGUugUCGcucugccCACCCgcgGGGGCa -3'
miRNA:   3'- ucuaGGCCGUCA--AGCu------GUGGG---UCCCG- -5'
18858 5' -57.1 NC_004683.1 + 16020 0.68 0.507259
Target:  5'- aAGggCgCGGCAacGUUCcGCACCaAGGGCa -3'
miRNA:   3'- -UCuaG-GCCGU--CAAGcUGUGGgUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.