miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18858 5' -57.1 NC_004683.1 + 5892 1.12 0.000438
Target:  5'- aAGAUCCGGCAGUUCGACACCCAGGGCg -3'
miRNA:   3'- -UCUAGGCCGUCAAGCUGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 7593 0.77 0.149945
Target:  5'- --uUCgGGCGGUUCG-UAUCCGGGGCa -3'
miRNA:   3'- ucuAGgCCGUCAAGCuGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 20385 0.77 0.149945
Target:  5'- gGGAUCUgcacuGGCAGcuggCGgcGCACCCGGGGCg -3'
miRNA:   3'- -UCUAGG-----CCGUCaa--GC--UGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 55787 0.75 0.185831
Target:  5'- cGGGUCUGGCAcaaacaCGACACCaAGGGCg -3'
miRNA:   3'- -UCUAGGCCGUcaa---GCUGUGGgUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 52337 0.73 0.253098
Target:  5'- cGAuUCCGGC-GUUCGGCgguacucGCCCuGGGCc -3'
miRNA:   3'- uCU-AGGCCGuCAAGCUG-------UGGGuCCCG- -5'
18858 5' -57.1 NC_004683.1 + 56388 0.72 0.28687
Target:  5'- gGGAUCCGGCgggaaccccgccaAGUcgcacaggUCGGcCACCuCGGGGCc -3'
miRNA:   3'- -UCUAGGCCG-------------UCA--------AGCU-GUGG-GUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 19889 0.72 0.302078
Target:  5'- gAGAUCCGGCAGaccaUCGAgauCAUCCAGaaagcgguguacGGCg -3'
miRNA:   3'- -UCUAGGCCGUCa---AGCU---GUGGGUC------------CCG- -5'
18858 5' -57.1 NC_004683.1 + 56797 0.72 0.302078
Target:  5'- cGGAaCCGGCGGcugcuggggugUCGACGCCgAGGcGCu -3'
miRNA:   3'- -UCUaGGCCGUCa----------AGCUGUGGgUCC-CG- -5'
18858 5' -57.1 NC_004683.1 + 38530 0.71 0.360566
Target:  5'- cGGUCaCGGCAG--CGGCACcgcguucauguugaaCCGGGGCa -3'
miRNA:   3'- uCUAG-GCCGUCaaGCUGUG---------------GGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 5750 0.7 0.382908
Target:  5'- ---gCCGaGCccGUUCGACGCCacaGGGGCg -3'
miRNA:   3'- ucuaGGC-CGu-CAAGCUGUGGg--UCCCG- -5'
18858 5' -57.1 NC_004683.1 + 24207 0.7 0.391743
Target:  5'- ---cUCGGCucaucCGACGCCCGGGGUg -3'
miRNA:   3'- ucuaGGCCGucaa-GCUGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 11036 0.7 0.391743
Target:  5'- cGGUCCcuGCAGUUCGGugucCAgUCGGGGCu -3'
miRNA:   3'- uCUAGGc-CGUCAAGCU----GUgGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 40139 0.7 0.409806
Target:  5'- cGGUUCGGUgaAGUUC-ACACCCagcgagGGGGCc -3'
miRNA:   3'- uCUAGGCCG--UCAAGcUGUGGG------UCCCG- -5'
18858 5' -57.1 NC_004683.1 + 25959 0.7 0.419029
Target:  5'- cAGAUCCuuGGCuacGGgaCGACAUaCAGGGCa -3'
miRNA:   3'- -UCUAGG--CCG---UCaaGCUGUGgGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 26362 0.7 0.419029
Target:  5'- -cGUCaGGCAGUUUGGUAUCCgAGGGCg -3'
miRNA:   3'- ucUAGgCCGUCAAGCUGUGGG-UCCCG- -5'
18858 5' -57.1 NC_004683.1 + 12689 0.7 0.419029
Target:  5'- cGAUCCgaGGCGGgcaCGGCAUCCucGGCa -3'
miRNA:   3'- uCUAGG--CCGUCaa-GCUGUGGGucCCG- -5'
18858 5' -57.1 NC_004683.1 + 14739 0.69 0.456167
Target:  5'- uGAUCCGGUA---CGGCucaccggAUCCGGGGCa -3'
miRNA:   3'- uCUAGGCCGUcaaGCUG-------UGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 17265 0.69 0.457143
Target:  5'- ---cUCGGCAuccuGUUCGACACCCGcGGUu -3'
miRNA:   3'- ucuaGGCCGU----CAAGCUGUGGGUcCCG- -5'
18858 5' -57.1 NC_004683.1 + 24886 0.69 0.464003
Target:  5'- --cUCUGGCAcaacucggcccguuGUUUaGGCGCUCAGGGCa -3'
miRNA:   3'- ucuAGGCCGU--------------CAAG-CUGUGGGUCCCG- -5'
18858 5' -57.1 NC_004683.1 + 9004 0.69 0.46696
Target:  5'- aAGAUCgguCGGCAGUUccuccuguaCGGCAUCCgcaagaaggAGGGCc -3'
miRNA:   3'- -UCUAG---GCCGUCAA---------GCUGUGGG---------UCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.