miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18860 3' -59 NC_004683.1 + 8655 0.66 0.500501
Target:  5'- aUGGgcAGCUgcgcGACGACCUGUUCGCUc- -3'
miRNA:   3'- gACU--UCGGa---CUGCUGGACGGGCGGuu -5'
18860 3' -59 NC_004683.1 + 14381 0.66 0.490278
Target:  5'- ---cAGCCgGACGACCgGCCCcgaccGCCGc -3'
miRNA:   3'- gacuUCGGaCUGCUGGaCGGG-----CGGUu -5'
18860 3' -59 NC_004683.1 + 22036 0.66 0.470131
Target:  5'- -cGAGGCCgucgcaacgGAUGAcCCUGCCgagCGCCGc -3'
miRNA:   3'- gaCUUCGGa--------CUGCU-GGACGG---GCGGUu -5'
18860 3' -59 NC_004683.1 + 26118 0.66 0.460217
Target:  5'- gUGggGCCcGGCGAuCCUGUcaucggguaUCGCCGg -3'
miRNA:   3'- gACuuCGGaCUGCU-GGACG---------GGCGGUu -5'
18860 3' -59 NC_004683.1 + 1674 0.66 0.450415
Target:  5'- uUGggGCCUcGACGAUCgcaGCgCgGCCGg -3'
miRNA:   3'- gACuuCGGA-CUGCUGGa--CG-GgCGGUu -5'
18860 3' -59 NC_004683.1 + 49260 0.67 0.440729
Target:  5'- ---cGGCUUGugGACgCUGCCCGaCGAc -3'
miRNA:   3'- gacuUCGGACugCUG-GACGGGCgGUU- -5'
18860 3' -59 NC_004683.1 + 100 0.67 0.421718
Target:  5'- -gGggGCCUGuC-ACCaUGCCCGCgAGg -3'
miRNA:   3'- gaCuuCGGACuGcUGG-ACGGGCGgUU- -5'
18860 3' -59 NC_004683.1 + 49498 0.67 0.421718
Target:  5'- aUGAucGUCacgUGAUGcACCUGCCCGUCGAg -3'
miRNA:   3'- gACUu-CGG---ACUGC-UGGACGGGCGGUU- -5'
18860 3' -59 NC_004683.1 + 41895 0.67 0.40687
Target:  5'- gCUGGgguGGCCUGGgugaggacgccuugcCGGCCUGCauGCCGAa -3'
miRNA:   3'- -GACU---UCGGACU---------------GCUGGACGggCGGUU- -5'
18860 3' -59 NC_004683.1 + 26593 0.67 0.403209
Target:  5'- aCUGc-GCCUaGAUGAUCUGgCUGCCAAg -3'
miRNA:   3'- -GACuuCGGA-CUGCUGGACgGGCGGUU- -5'
18860 3' -59 NC_004683.1 + 24283 0.68 0.34264
Target:  5'- gCUGccacuGCCaGACGACCUGUUCGCUg- -3'
miRNA:   3'- -GACuu---CGGaCUGCUGGACGGGCGGuu -5'
18860 3' -59 NC_004683.1 + 46194 0.69 0.318768
Target:  5'- -aGAAGCgCgGACGAgCCUGCgaacCCGCCGAc -3'
miRNA:   3'- gaCUUCG-GaCUGCU-GGACG----GGCGGUU- -5'
18860 3' -59 NC_004683.1 + 27937 0.69 0.311092
Target:  5'- ---uGGCCUGuACGGCCccUGCCuCGCCGGg -3'
miRNA:   3'- gacuUCGGAC-UGCUGG--ACGG-GCGGUU- -5'
18860 3' -59 NC_004683.1 + 5378 0.69 0.303559
Target:  5'- -cGAgcucGGCCUGGCGACggucgaGCCCGUCGAg -3'
miRNA:   3'- gaCU----UCGGACUGCUGga----CGGGCGGUU- -5'
18860 3' -59 NC_004683.1 + 16419 0.69 0.303559
Target:  5'- gCUGAucgucaccAGCCagaacagGGCGAUCgagugGCCCGCCGAg -3'
miRNA:   3'- -GACU--------UCGGa------CUGCUGGa----CGGGCGGUU- -5'
18860 3' -59 NC_004683.1 + 9784 0.72 0.201658
Target:  5'- gUGAccgcguugccGGCCUGGCGcACCUGCUCGCg-- -3'
miRNA:   3'- gACU----------UCGGACUGC-UGGACGGGCGguu -5'
18860 3' -59 NC_004683.1 + 52053 0.72 0.191248
Target:  5'- uCUGAGGCUUGcCGAUCUGCUCGUgAGu -3'
miRNA:   3'- -GACUUCGGACuGCUGGACGGGCGgUU- -5'
18860 3' -59 NC_004683.1 + 6588 1.06 0.000567
Target:  5'- aCUGAAGCCUGACGACCUGCCCGCCAAg -3'
miRNA:   3'- -GACUUCGGACUGCUGGACGGGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.