miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18860 5' -54.9 NC_004683.1 + 17765 0.66 0.761636
Target:  5'- ---aCGCCuGGCGguuCACCGAGGCguugUCGGc -3'
miRNA:   3'- ucaaGCGG-CUGUu--GUGGCUCCG----AGUC- -5'
18860 5' -54.9 NC_004683.1 + 24768 0.66 0.761636
Target:  5'- cAGUcCGCCGACGGguUCGAGgacgcGCUCGa -3'
miRNA:   3'- -UCAaGCGGCUGUUguGGCUC-----CGAGUc -5'
18860 5' -54.9 NC_004683.1 + 20536 0.66 0.751339
Target:  5'- --aUCaCCGGCGGCACCGGcGGCaacggCGGg -3'
miRNA:   3'- ucaAGcGGCUGUUGUGGCU-CCGa----GUC- -5'
18860 5' -54.9 NC_004683.1 + 22021 0.66 0.751339
Target:  5'- uGUUCaGCUGACG--GCCGAGGCcgUCGc -3'
miRNA:   3'- uCAAG-CGGCUGUugUGGCUCCG--AGUc -5'
18860 5' -54.9 NC_004683.1 + 17999 0.66 0.740919
Target:  5'- cGGUgaaCGCCGACGGCGaCG-GGUUCGa -3'
miRNA:   3'- -UCAa--GCGGCUGUUGUgGCuCCGAGUc -5'
18860 5' -54.9 NC_004683.1 + 33438 0.66 0.740919
Target:  5'- aAGUUCaCgGACAGCAgCGAucucGGCUUGGg -3'
miRNA:   3'- -UCAAGcGgCUGUUGUgGCU----CCGAGUC- -5'
18860 5' -54.9 NC_004683.1 + 41774 0.66 0.740919
Target:  5'- ---cCGCCGcCGACGCCGAgaagugGGUUCGa -3'
miRNA:   3'- ucaaGCGGCuGUUGUGGCU------CCGAGUc -5'
18860 5' -54.9 NC_004683.1 + 28838 0.66 0.740919
Target:  5'- gAGgUCGCCGACgAGCAggGAGcGCUCGa -3'
miRNA:   3'- -UCaAGCGGCUG-UUGUggCUC-CGAGUc -5'
18860 5' -54.9 NC_004683.1 + 25890 0.66 0.740919
Target:  5'- gAGUUCGCCGGgcaGACGCUGgccgccucGGuGUUCGGg -3'
miRNA:   3'- -UCAAGCGGCUg--UUGUGGC--------UC-CGAGUC- -5'
18860 5' -54.9 NC_004683.1 + 40206 0.66 0.737772
Target:  5'- cAGUUCGCCcgggcugccuACGACGCCGAGcaggcccgcgccgaGCUgCAGg -3'
miRNA:   3'- -UCAAGCGGc---------UGUUGUGGCUC--------------CGA-GUC- -5'
18860 5' -54.9 NC_004683.1 + 30646 0.66 0.734614
Target:  5'- ---cCGCCGACAGCGCCGGucgauuuccuuguauGcCUCGGu -3'
miRNA:   3'- ucaaGCGGCUGUUGUGGCU---------------CcGAGUC- -5'
18860 5' -54.9 NC_004683.1 + 5333 0.66 0.73039
Target:  5'- ---aCcCCGGCAGCgcgACCGcGGGCUCGGg -3'
miRNA:   3'- ucaaGcGGCUGUUG---UGGC-UCCGAGUC- -5'
18860 5' -54.9 NC_004683.1 + 23926 0.67 0.709048
Target:  5'- ----gGCCGACGGCAUCGucGGGC-CGGu -3'
miRNA:   3'- ucaagCGGCUGUUGUGGC--UCCGaGUC- -5'
18860 5' -54.9 NC_004683.1 + 39170 0.67 0.709048
Target:  5'- --cUCGUCGcCAAgGCCGAGGCa--- -3'
miRNA:   3'- ucaAGCGGCuGUUgUGGCUCCGaguc -5'
18860 5' -54.9 NC_004683.1 + 51729 0.67 0.707972
Target:  5'- aGGUaCGCCGGCGacgacgucgccagGCACUGAcgGGC-CAGg -3'
miRNA:   3'- -UCAaGCGGCUGU-------------UGUGGCU--CCGaGUC- -5'
18860 5' -54.9 NC_004683.1 + 36881 0.67 0.698258
Target:  5'- ---cCGUCGAUAcCGCCGAGGC-CAc -3'
miRNA:   3'- ucaaGCGGCUGUuGUGGCUCCGaGUc -5'
18860 5' -54.9 NC_004683.1 + 7358 0.67 0.687403
Target:  5'- gAGUUgGUcuaCGACGGCACCGAGcacccggaggcGCUCGa -3'
miRNA:   3'- -UCAAgCG---GCUGUUGUGGCUC-----------CGAGUc -5'
18860 5' -54.9 NC_004683.1 + 18122 0.67 0.676496
Target:  5'- cGGUcgcCGCCGGCAccuaccgcACGCCGuGGCggcCGGa -3'
miRNA:   3'- -UCAa--GCGGCUGU--------UGUGGCuCCGa--GUC- -5'
18860 5' -54.9 NC_004683.1 + 46920 0.67 0.665546
Target:  5'- --gUCGCCGcCGcgGCCGAacGGCUCGGc -3'
miRNA:   3'- ucaAGCGGCuGUugUGGCU--CCGAGUC- -5'
18860 5' -54.9 NC_004683.1 + 14495 0.67 0.665546
Target:  5'- cGUUCaaCuACGACACCGAGGCUg-- -3'
miRNA:   3'- uCAAGcgGcUGUUGUGGCUCCGAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.