miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18862 5' -52.6 NC_004683.1 + 13918 0.66 0.853079
Target:  5'- aGAUCGGGCCGg-CUGUcgGGUGc-- -3'
miRNA:   3'- aCUAGUUCGGCaaGGCGuaCCGCaag -5'
18862 5' -52.6 NC_004683.1 + 25220 0.66 0.844319
Target:  5'- cUGAUCGAGCUGcugUCggUGCGcGGCGUg- -3'
miRNA:   3'- -ACUAGUUCGGCa--AG--GCGUaCCGCAag -5'
18862 5' -52.6 NC_004683.1 + 52210 0.66 0.835326
Target:  5'- cGAUgAGGCCGUcgucggucgggUCCGCcucGGCGa-- -3'
miRNA:   3'- aCUAgUUCGGCA-----------AGGCGua-CCGCaag -5'
18862 5' -52.6 NC_004683.1 + 15556 0.66 0.816676
Target:  5'- aGGUUGAGCCGUacuaCGUcaagGUGGCGaUCg -3'
miRNA:   3'- aCUAGUUCGGCAag--GCG----UACCGCaAG- -5'
18862 5' -52.6 NC_004683.1 + 53631 0.67 0.777023
Target:  5'- cGAUCAGGCCcg-CCGCGaccUGGCc--- -3'
miRNA:   3'- aCUAGUUCGGcaaGGCGU---ACCGcaag -5'
18862 5' -52.6 NC_004683.1 + 640 0.68 0.745589
Target:  5'- -cGUCGAGCaCGguggUgUGCAUGGCGUa- -3'
miRNA:   3'- acUAGUUCG-GCa---AgGCGUACCGCAag -5'
18862 5' -52.6 NC_004683.1 + 43061 0.68 0.745589
Target:  5'- gGGUCAucguuGCC---CCGCAggGGCGUUCu -3'
miRNA:   3'- aCUAGUu----CGGcaaGGCGUa-CCGCAAG- -5'
18862 5' -52.6 NC_004683.1 + 5395 0.69 0.689838
Target:  5'- cGGUCGAGCCcgucgaggcccucGUUCUGCGugcgcUGGCGg-- -3'
miRNA:   3'- aCUAGUUCGG-------------CAAGGCGU-----ACCGCaag -5'
18862 5' -52.6 NC_004683.1 + 5638 0.69 0.657356
Target:  5'- aUGGUCGccucGaCCGUUUCGCGgcUGGCGUUg -3'
miRNA:   3'- -ACUAGUu---C-GGCAAGGCGU--ACCGCAAg -5'
18862 5' -52.6 NC_004683.1 + 1463 0.69 0.646093
Target:  5'- -aGUCAcAGCCaGgcCCGCGccUGGCGUUCg -3'
miRNA:   3'- acUAGU-UCGG-CaaGGCGU--ACCGCAAG- -5'
18862 5' -52.6 NC_004683.1 + 53083 0.7 0.623538
Target:  5'- gGAUCGAGCCGaUCaugGgGUGGCGg-- -3'
miRNA:   3'- aCUAGUUCGGCaAGg--CgUACCGCaag -5'
18862 5' -52.6 NC_004683.1 + 17868 0.71 0.556376
Target:  5'- cGggCGGGCCGgggacgCCGCAgcGCGUUCa -3'
miRNA:   3'- aCuaGUUCGGCaa----GGCGUacCGCAAG- -5'
18862 5' -52.6 NC_004683.1 + 47320 0.71 0.545353
Target:  5'- aUGGUCGAGCagg-UCGcCGUGGUGUUCa -3'
miRNA:   3'- -ACUAGUUCGgcaaGGC-GUACCGCAAG- -5'
18862 5' -52.6 NC_004683.1 + 8284 1.11 0.001339
Target:  5'- cUGAUCAAGCCGUUCCGCAUGGCGUUCg -3'
miRNA:   3'- -ACUAGUUCGGCAAGGCGUACCGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.