miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18863 3' -54 NC_004683.1 + 56727 0.66 0.803247
Target:  5'- ----cCGCCGCggGCAGCaGCG-GCGGCAu -3'
miRNA:   3'- guagaGUGGCG--UGUUG-CGCuUGCCGU- -5'
18863 3' -54 NC_004683.1 + 48108 0.66 0.803247
Target:  5'- --gUUCugCaGCGCcuggAACGUGAACGGCu -3'
miRNA:   3'- guaGAGugG-CGUG----UUGCGCUUGCCGu -5'
18863 3' -54 NC_004683.1 + 46784 0.66 0.803247
Target:  5'- --aUUCAUCGCGgAguuGCGCG-GCGGCGg -3'
miRNA:   3'- guaGAGUGGCGUgU---UGCGCuUGCCGU- -5'
18863 3' -54 NC_004683.1 + 13457 0.66 0.803247
Target:  5'- --gUUCcCCGCGCAGgGUG-GCGGCGg -3'
miRNA:   3'- guaGAGuGGCGUGUUgCGCuUGCCGU- -5'
18863 3' -54 NC_004683.1 + 12962 0.66 0.803247
Target:  5'- gGUCUCugUcgacCACAAUGCGGACGaGUg -3'
miRNA:   3'- gUAGAGugGc---GUGUUGCGCUUGC-CGu -5'
18863 3' -54 NC_004683.1 + 21145 0.66 0.793505
Target:  5'- gCGUUcCAuCCGCACGACGCgccuGAGCcuGGCGg -3'
miRNA:   3'- -GUAGaGU-GGCGUGUUGCG----CUUG--CCGU- -5'
18863 3' -54 NC_004683.1 + 45477 0.66 0.793505
Target:  5'- -uUCUCG-CGCGCGACGCGccccgcaccGAcCGGCu -3'
miRNA:   3'- guAGAGUgGCGUGUUGCGC---------UU-GCCGu -5'
18863 3' -54 NC_004683.1 + 12716 0.66 0.793505
Target:  5'- gCAUcCUCGgCGCGCGggGCGCGuuCGGUc -3'
miRNA:   3'- -GUA-GAGUgGCGUGU--UGCGCuuGCCGu -5'
18863 3' -54 NC_004683.1 + 24474 0.66 0.793505
Target:  5'- aCGUCcgGCUGCACGAUGCc--CGGCAu -3'
miRNA:   3'- -GUAGagUGGCGUGUUGCGcuuGCCGU- -5'
18863 3' -54 NC_004683.1 + 44895 0.66 0.783592
Target:  5'- -----gGCCGCGCucAgGUGGGCGGCAg -3'
miRNA:   3'- guagagUGGCGUGu-UgCGCUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 8737 0.66 0.783592
Target:  5'- gUAUCUCGCCgGCGCGuucgGUGAG-GGCAa -3'
miRNA:   3'- -GUAGAGUGG-CGUGUug--CGCUUgCCGU- -5'
18863 3' -54 NC_004683.1 + 51676 0.66 0.783592
Target:  5'- gGUCagaaACCGCACGcCGCGGuucgaGGCAg -3'
miRNA:   3'- gUAGag--UGGCGUGUuGCGCUug---CCGU- -5'
18863 3' -54 NC_004683.1 + 13557 0.66 0.777566
Target:  5'- gCAUCUCagGCCGCacagaucgGCAucaagcucgccaaccGCGCGAuCGGCu -3'
miRNA:   3'- -GUAGAG--UGGCG--------UGU---------------UGCGCUuGCCGu -5'
18863 3' -54 NC_004683.1 + 40511 0.66 0.773518
Target:  5'- --aUUCcCCGCACGGCGCcccccuCGGCGg -3'
miRNA:   3'- guaGAGuGGCGUGUUGCGcuu---GCCGU- -5'
18863 3' -54 NC_004683.1 + 49072 0.66 0.773518
Target:  5'- ---gUCACCGCGC--CGCGGguuuucgacuACGGCGu -3'
miRNA:   3'- guagAGUGGCGUGuuGCGCU----------UGCCGU- -5'
18863 3' -54 NC_004683.1 + 5462 0.66 0.770467
Target:  5'- gGUCgUCGCCaccggcgaugugugGCACGGCGUGuccuCGGCGg -3'
miRNA:   3'- gUAG-AGUGG--------------CGUGUUGCGCuu--GCCGU- -5'
18863 3' -54 NC_004683.1 + 11511 0.66 0.763297
Target:  5'- ----cCACCGCACGAgcaGCGuuCGGCGc -3'
miRNA:   3'- guagaGUGGCGUGUUg--CGCuuGCCGU- -5'
18863 3' -54 NC_004683.1 + 16655 0.66 0.763297
Target:  5'- uCAUCgggUCACCGCcgcgGCGAUGCccuCGGCGa -3'
miRNA:   3'- -GUAG---AGUGGCG----UGUUGCGcuuGCCGU- -5'
18863 3' -54 NC_004683.1 + 24619 0.66 0.762267
Target:  5'- gGUCaUCGCgGCGCAgaguuucACGCGAGuuggcacaauuCGGCAc -3'
miRNA:   3'- gUAG-AGUGgCGUGU-------UGCGCUU-----------GCCGU- -5'
18863 3' -54 NC_004683.1 + 21686 0.67 0.752938
Target:  5'- gCAUCaUCACCGgGgugguCggUGCGggUGGCGc -3'
miRNA:   3'- -GUAG-AGUGGCgU-----GuuGCGCuuGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.