miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18863 3' -54 NC_004683.1 + 10592 0.67 0.752938
Target:  5'- gGUCgagaaggcgCGCCGCGCugaggUGCGGGCGGUc -3'
miRNA:   3'- gUAGa--------GUGGCGUGuu---GCGCUUGCCGu -5'
18863 3' -54 NC_004683.1 + 21686 0.67 0.752938
Target:  5'- gCAUCaUCACCGgGgugguCggUGCGggUGGCGc -3'
miRNA:   3'- -GUAG-AGUGGCgU-----GuuGCGCuuGCCGU- -5'
18863 3' -54 NC_004683.1 + 41917 0.67 0.751895
Target:  5'- gCAUCg-GCUGCACAACGagcugcgucccacCGGACGGUu -3'
miRNA:   3'- -GUAGagUGGCGUGUUGC-------------GCUUGCCGu -5'
18863 3' -54 NC_004683.1 + 21534 0.67 0.742454
Target:  5'- gGUCUggUGCCGCuacauCGACGUGAuccugcuggGCGGCGg -3'
miRNA:   3'- gUAGA--GUGGCGu----GUUGCGCU---------UGCCGU- -5'
18863 3' -54 NC_004683.1 + 41043 0.67 0.742454
Target:  5'- --aCUCGUCGCACAGCGUGAAUGu-- -3'
miRNA:   3'- guaGAGUGGCGUGUUGCGCUUGCcgu -5'
18863 3' -54 NC_004683.1 + 48904 0.67 0.731856
Target:  5'- ---aUCACCGUGCGGCaGCcAugGGCAu -3'
miRNA:   3'- guagAGUGGCGUGUUG-CGcUugCCGU- -5'
18863 3' -54 NC_004683.1 + 8707 0.67 0.731856
Target:  5'- --aUUCGCUGCGCAGCcacucGCcGGCGGCGu -3'
miRNA:   3'- guaGAGUGGCGUGUUG-----CGcUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 53377 0.67 0.721157
Target:  5'- gUAUCgcucgaCGCCGaCGCGgacACGcCGGGCGGCAa -3'
miRNA:   3'- -GUAGa-----GUGGC-GUGU---UGC-GCUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 2964 0.67 0.721157
Target:  5'- gGUCcaGCCGUugcccuccaGCAGCGCG-ACGGCGc -3'
miRNA:   3'- gUAGagUGGCG---------UGUUGCGCuUGCCGU- -5'
18863 3' -54 NC_004683.1 + 40784 0.67 0.721157
Target:  5'- ----cCGCCGCGacCGACGCGcucgccGACGGCGa -3'
miRNA:   3'- guagaGUGGCGU--GUUGCGC------UUGCCGU- -5'
18863 3' -54 NC_004683.1 + 41308 0.67 0.721157
Target:  5'- --cCUCACCGCGCcACccgcccagGCuGACGGCGu -3'
miRNA:   3'- guaGAGUGGCGUGuUG--------CGcUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 33266 0.67 0.721157
Target:  5'- ---gUCGUCGCACGcuuCGCGGACGGUg -3'
miRNA:   3'- guagAGUGGCGUGUu--GCGCUUGCCGu -5'
18863 3' -54 NC_004683.1 + 3360 0.67 0.716852
Target:  5'- gAUCgCGCCGCAgcucggcggcgaaGACGCGGcCGGCGg -3'
miRNA:   3'- gUAGaGUGGCGUg------------UUGCGCUuGCCGU- -5'
18863 3' -54 NC_004683.1 + 7828 0.67 0.710369
Target:  5'- ---gUCGCuCGCGCAGCa-GAACGGCGc -3'
miRNA:   3'- guagAGUG-GCGUGUUGcgCUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 19836 0.67 0.710369
Target:  5'- cCAUCuUCGCgGguUGGCGCGGuucagccaGCGGCAg -3'
miRNA:   3'- -GUAG-AGUGgCguGUUGCGCU--------UGCCGU- -5'
18863 3' -54 NC_004683.1 + 46182 0.67 0.699501
Target:  5'- gAUCcgaGCCGCAgaAGCGCGGACGaGCc -3'
miRNA:   3'- gUAGag-UGGCGUg-UUGCGCUUGC-CGu -5'
18863 3' -54 NC_004683.1 + 35137 0.67 0.699501
Target:  5'- --gCUCACCGCACGAC-CGuuCGGa- -3'
miRNA:   3'- guaGAGUGGCGUGUUGcGCuuGCCgu -5'
18863 3' -54 NC_004683.1 + 19070 0.67 0.699501
Target:  5'- ---aUCACC-CACGACGCcaccGACGGCGc -3'
miRNA:   3'- guagAGUGGcGUGUUGCGc---UUGCCGU- -5'
18863 3' -54 NC_004683.1 + 7309 0.67 0.699501
Target:  5'- --gCUCACCGCGCccccaacCGCG-GCGGUg -3'
miRNA:   3'- guaGAGUGGCGUGuu-----GCGCuUGCCGu -5'
18863 3' -54 NC_004683.1 + 3578 0.67 0.699501
Target:  5'- -cUCUUGCCGCcCGGCGUGuccgcguCGGCGu -3'
miRNA:   3'- guAGAGUGGCGuGUUGCGCuu-----GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.