miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18863 3' -54 NC_004683.1 + 21534 0.67 0.742454
Target:  5'- gGUCUggUGCCGCuacauCGACGUGAuccugcuggGCGGCGg -3'
miRNA:   3'- gUAGA--GUGGCGu----GUUGCGCU---------UGCCGU- -5'
18863 3' -54 NC_004683.1 + 7309 0.67 0.699501
Target:  5'- --gCUCACCGCGCccccaacCGCG-GCGGUg -3'
miRNA:   3'- guaGAGUGGCGUGuu-----GCGCuUGCCGu -5'
18863 3' -54 NC_004683.1 + 3578 0.67 0.699501
Target:  5'- -cUCUUGCCGCcCGGCGUGuccgcguCGGCGu -3'
miRNA:   3'- guAGAGUGGCGuGUUGCGCuu-----GCCGU- -5'
18863 3' -54 NC_004683.1 + 19070 0.67 0.699501
Target:  5'- ---aUCACC-CACGACGCcaccGACGGCGc -3'
miRNA:   3'- guagAGUGGcGUGUUGCGc---UUGCCGU- -5'
18863 3' -54 NC_004683.1 + 19836 0.67 0.710369
Target:  5'- cCAUCuUCGCgGguUGGCGCGGuucagccaGCGGCAg -3'
miRNA:   3'- -GUAG-AGUGgCguGUUGCGCU--------UGCCGU- -5'
18863 3' -54 NC_004683.1 + 41308 0.67 0.721157
Target:  5'- --cCUCACCGCGCcACccgcccagGCuGACGGCGu -3'
miRNA:   3'- guaGAGUGGCGUGuUG--------CGcUUGCCGU- -5'
18863 3' -54 NC_004683.1 + 33266 0.67 0.721157
Target:  5'- ---gUCGUCGCACGcuuCGCGGACGGUg -3'
miRNA:   3'- guagAGUGGCGUGUu--GCGCUUGCCGu -5'
18863 3' -54 NC_004683.1 + 40784 0.67 0.721157
Target:  5'- ----cCGCCGCGacCGACGCGcucgccGACGGCGa -3'
miRNA:   3'- guagaGUGGCGU--GUUGCGC------UUGCCGU- -5'
18863 3' -54 NC_004683.1 + 48904 0.67 0.731856
Target:  5'- ---aUCACCGUGCGGCaGCcAugGGCAu -3'
miRNA:   3'- guagAGUGGCGUGUUG-CGcUugCCGU- -5'
18863 3' -54 NC_004683.1 + 6879 0.68 0.688568
Target:  5'- ----cCGCUGgACGGCGCGcGACGGCGc -3'
miRNA:   3'- guagaGUGGCgUGUUGCGC-UUGCCGU- -5'
18863 3' -54 NC_004683.1 + 23903 0.68 0.677579
Target:  5'- -uUCcagCGCCGCguagGCGugGCGGccgACGGCAu -3'
miRNA:   3'- guAGa--GUGGCG----UGUugCGCU---UGCCGU- -5'
18863 3' -54 NC_004683.1 + 51769 0.68 0.666546
Target:  5'- --cUUCGCCGCcaAACGCGAGgcccuCGGCAu -3'
miRNA:   3'- guaGAGUGGCGugUUGCGCUU-----GCCGU- -5'
18863 3' -54 NC_004683.1 + 10178 0.75 0.31748
Target:  5'- uCAUCUCGCCGaGCGaggcGCGUGAGCGGg- -3'
miRNA:   3'- -GUAGAGUGGCgUGU----UGCGCUUGCCgu -5'
18863 3' -54 NC_004683.1 + 44425 0.73 0.403397
Target:  5'- aGUCgUCGCgCGCACAACGCGcGCaGCGc -3'
miRNA:   3'- gUAG-AGUG-GCGUGUUGCGCuUGcCGU- -5'
18863 3' -54 NC_004683.1 + 46974 0.72 0.412763
Target:  5'- ----aCACCGCGCGugGCGAucaGgGGCAg -3'
miRNA:   3'- guagaGUGGCGUGUugCGCU---UgCCGU- -5'
18863 3' -54 NC_004683.1 + 53606 0.71 0.481869
Target:  5'- gCGUCuUCGCCGCcgagcuGCGGCGCGAucaGGCc -3'
miRNA:   3'- -GUAG-AGUGGCG------UGUUGCGCUug-CCGu -5'
18863 3' -54 NC_004683.1 + 43746 0.69 0.600032
Target:  5'- gAUCcgCAagUCGCGCAACGCGAAagcugcUGGCAu -3'
miRNA:   3'- gUAGa-GU--GGCGUGUUGCGCUU------GCCGU- -5'
18863 3' -54 NC_004683.1 + 5740 0.69 0.633295
Target:  5'- gCAUCgUCACCGCGCu-CGCGGGCa--- -3'
miRNA:   3'- -GUAG-AGUGGCGUGuuGCGCUUGccgu -5'
18863 3' -54 NC_004683.1 + 10928 0.69 0.633295
Target:  5'- --cCUCAUCGCA--ACGCGAAUGGg- -3'
miRNA:   3'- guaGAGUGGCGUguUGCGCUUGCCgu -5'
18863 3' -54 NC_004683.1 + 15993 0.68 0.655481
Target:  5'- gCAUCgggCAccgacCCGCGCAACGacaaGGgcGCGGCAa -3'
miRNA:   3'- -GUAGa--GU-----GGCGUGUUGCg---CU--UGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.