miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18863 5' -61.9 NC_004683.1 + 32622 0.66 0.396477
Target:  5'- cUCGUaCGCUuCGCCCAGccgcaguuGGUcGGCAGCc -3'
miRNA:   3'- cAGCG-GCGA-GCGGGUC--------CUAcCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 15655 0.66 0.387778
Target:  5'- -aCGCCGUcaGCCUGGGc-GGGUGGCg -3'
miRNA:   3'- caGCGGCGagCGGGUCCuaCCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 5585 0.66 0.379206
Target:  5'- uGUCGCCcuggcucacgcGgUCGUCgAGGAU-GGCGGCc -3'
miRNA:   3'- -CAGCGG-----------CgAGCGGgUCCUAcCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 40819 0.66 0.370761
Target:  5'- -aUGCCGCUuucucguaCGCCCAgucguGGGUGucgauguaguacGGCAGCc -3'
miRNA:   3'- caGCGGCGA--------GCGGGU-----CCUAC------------CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 46919 0.66 0.362446
Target:  5'- aGUCGCCGCcgCGgCCGaacGGcucGGCGGCg -3'
miRNA:   3'- -CAGCGGCGa-GCgGGU---CCuacCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 45059 0.66 0.362446
Target:  5'- -cCGCCaGCU-GCUCAGGAgucagcccggGGGguGCu -3'
miRNA:   3'- caGCGG-CGAgCGGGUCCUa---------CCCguCG- -5'
18863 5' -61.9 NC_004683.1 + 24198 0.66 0.35752
Target:  5'- -cCGCUcaaGCUcggcucauccgaCGCCCGGGGUGaugacgucacgcacuGGCAGCg -3'
miRNA:   3'- caGCGG---CGA------------GCGGGUCCUAC---------------CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 1842 0.66 0.35345
Target:  5'- cUCGCCauGCUCGUCCAuGGAguggaugagcuugUGGG-AGCc -3'
miRNA:   3'- cAGCGG--CGAGCGGGU-CCU-------------ACCCgUCG- -5'
18863 5' -61.9 NC_004683.1 + 31680 0.67 0.346208
Target:  5'- cUCGCUGUgCGCCugCAGGcccGGCAGCg -3'
miRNA:   3'- cAGCGGCGaGCGG--GUCCuacCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 40080 0.67 0.346208
Target:  5'- -gCGCUGUUCGCCCGGGcc---CAGCg -3'
miRNA:   3'- caGCGGCGAGCGGGUCCuacccGUCG- -5'
18863 5' -61.9 NC_004683.1 + 37026 0.67 0.346208
Target:  5'- cGUCGCCcuGCUCgggcuGCCCcuuGGGGUaccccggcgGGGCGGUu -3'
miRNA:   3'- -CAGCGG--CGAG-----CGGG---UCCUA---------CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 31306 0.67 0.346208
Target:  5'- --aGCUGCggGCCguGGcgGuGGCGGCg -3'
miRNA:   3'- cagCGGCGagCGGguCCuaC-CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 45221 0.67 0.34541
Target:  5'- cUCGCCGagaucgucagCGCCUcuagcgacagcaaAGGAUcGGGCGGUg -3'
miRNA:   3'- cAGCGGCga--------GCGGG-------------UCCUA-CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 48320 0.67 0.330498
Target:  5'- gGUCGUCGCgcagcUGCCCAuccUGGGCgAGCg -3'
miRNA:   3'- -CAGCGGCGa----GCGGGUccuACCCG-UCG- -5'
18863 5' -61.9 NC_004683.1 + 43178 0.67 0.330498
Target:  5'- -cUGCUGCUgGCCCGGcuGAcUGGGCugAGCc -3'
miRNA:   3'- caGCGGCGAgCGGGUC--CU-ACCCG--UCG- -5'
18863 5' -61.9 NC_004683.1 + 42327 0.67 0.330498
Target:  5'- uUCGCCGUgaUCGCgUGGGuUGGGCucgugaugauguGGCg -3'
miRNA:   3'- cAGCGGCG--AGCGgGUCCuACCCG------------UCG- -5'
18863 5' -61.9 NC_004683.1 + 43611 0.67 0.330498
Target:  5'- -gUGCCGC-CGCCaccGGAgacuggGGGCAGg -3'
miRNA:   3'- caGCGGCGaGCGGgu-CCUa-----CCCGUCg -5'
18863 5' -61.9 NC_004683.1 + 42598 0.68 0.300673
Target:  5'- --gGCCGgUCGUCCggcuGGGGUGGuCGGCg -3'
miRNA:   3'- cagCGGCgAGCGGG----UCCUACCcGUCG- -5'
18863 5' -61.9 NC_004683.1 + 34057 0.68 0.286558
Target:  5'- -aCGCUGCagGCCCAuGAUGugguccGGCAGCc -3'
miRNA:   3'- caGCGGCGagCGGGUcCUAC------CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 52219 0.68 0.282426
Target:  5'- cGUCGUCGgUCGgguccgccucggcgaCCCGGGccGGcGCGGCa -3'
miRNA:   3'- -CAGCGGCgAGC---------------GGGUCCuaCC-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.