miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18863 5' -61.9 NC_004683.1 + 8637 1.1 0.000192
Target:  5'- gGUCGCCGCUCGCCCAGGAUGGGCAGCu -3'
miRNA:   3'- -CAGCGGCGAGCGGGUCCUACCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 32622 0.66 0.396477
Target:  5'- cUCGUaCGCUuCGCCCAGccgcaguuGGUcGGCAGCc -3'
miRNA:   3'- cAGCG-GCGA-GCGGGUC--------CUAcCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 24198 0.66 0.35752
Target:  5'- -cCGCUcaaGCUcggcucauccgaCGCCCGGGGUGaugacgucacgcacuGGCAGCg -3'
miRNA:   3'- caGCGG---CGA------------GCGGGUCCUAC---------------CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 40080 0.67 0.346208
Target:  5'- -gCGCUGUUCGCCCGGGcc---CAGCg -3'
miRNA:   3'- caGCGGCGAGCGGGUCCuacccGUCG- -5'
18863 5' -61.9 NC_004683.1 + 37026 0.67 0.346208
Target:  5'- cGUCGCCcuGCUCgggcuGCCCcuuGGGGUaccccggcgGGGCGGUu -3'
miRNA:   3'- -CAGCGG--CGAG-----CGGG---UCCUA---------CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 31306 0.67 0.346208
Target:  5'- --aGCUGCggGCCguGGcgGuGGCGGCg -3'
miRNA:   3'- cagCGGCGagCGGguCCuaC-CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 45221 0.67 0.34541
Target:  5'- cUCGCCGagaucgucagCGCCUcuagcgacagcaaAGGAUcGGGCGGUg -3'
miRNA:   3'- cAGCGGCga--------GCGGG-------------UCCUA-CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 42327 0.67 0.330498
Target:  5'- uUCGCCGUgaUCGCgUGGGuUGGGCucgugaugauguGGCg -3'
miRNA:   3'- cAGCGGCG--AGCGgGUCCuACCCG------------UCG- -5'
18863 5' -61.9 NC_004683.1 + 42598 0.68 0.300673
Target:  5'- --gGCCGgUCGUCCggcuGGGGUGGuCGGCg -3'
miRNA:   3'- cagCGGCgAGCGGG----UCCUACCcGUCG- -5'
18863 5' -61.9 NC_004683.1 + 34057 0.68 0.286558
Target:  5'- -aCGCUGCagGCCCAuGAUGugguccGGCAGCc -3'
miRNA:   3'- caGCGGCGagCGGGUcCUAC------CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 52219 0.68 0.282426
Target:  5'- cGUCGUCGgUCGgguccgccucggcgaCCCGGGccGGcGCGGCa -3'
miRNA:   3'- -CAGCGGCgAGC---------------GGGUCCuaCC-CGUCG- -5'
18863 5' -61.9 NC_004683.1 + 7165 0.7 0.202103
Target:  5'- cGUCGCUGagacgggugCGCCCGGGugGGGCGGa -3'
miRNA:   3'- -CAGCGGCga-------GCGGGUCCuaCCCGUCg -5'
18863 5' -61.9 NC_004683.1 + 247 0.71 0.164219
Target:  5'- -cCGCCGCUgcUGCCCGcGGcgGGGCuggucGCg -3'
miRNA:   3'- caGCGGCGA--GCGGGU-CCuaCCCGu----CG- -5'
18863 5' -61.9 NC_004683.1 + 32946 0.69 0.252937
Target:  5'- cUCGUCGCUCGacggguaggugaaCCCggccGGGgcGGGCGGUg -3'
miRNA:   3'- cAGCGGCGAGC-------------GGG----UCCuaCCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 2311 0.69 0.237676
Target:  5'- cGUCGUCGaCgaugacgauguuggCGUUCGGGGUGuGGCGGCg -3'
miRNA:   3'- -CAGCGGC-Ga-------------GCGGGUCCUAC-CCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 25749 0.71 0.177615
Target:  5'- gGUUGUCGCUCuGCCCAcccgcggGGGCAGUg -3'
miRNA:   3'- -CAGCGGCGAG-CGGGUccua---CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 56137 0.71 0.164219
Target:  5'- --aGCCGCUUGgCCAGaGAcGGGguGCu -3'
miRNA:   3'- cagCGGCGAGCgGGUC-CUaCCCguCG- -5'
18863 5' -61.9 NC_004683.1 + 44163 0.71 0.163359
Target:  5'- -gCGCCGCaUCGCCCGGGuauccgccaGCGGCg -3'
miRNA:   3'- caGCGGCG-AGCGGGUCCuacc-----CGUCG- -5'
18863 5' -61.9 NC_004683.1 + 19912 0.73 0.136437
Target:  5'- aUCGCCGCccgaacCGCCCcgccGGGGUaccccaagGGGCAGCc -3'
miRNA:   3'- cAGCGGCGa-----GCGGG----UCCUA--------CCCGUCG- -5'
18863 5' -61.9 NC_004683.1 + 15655 0.66 0.387778
Target:  5'- -aCGCCGUcaGCCUGGGc-GGGUGGCg -3'
miRNA:   3'- caGCGGCGagCGGGUCCuaCCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.